Hb_146225_010

Information

Type -
Description -
Location Contig146225: 2688-8141
Sequence    

Annotation

kegg
ID rcu:RCOM_0644380
description mitochondrial inner membrane protease subunit, putative
nr
ID XP_002528106.1
description mitochondrial inner membrane protease subunit, putative [Ricinus communis]
swissprot
ID Q2KI92
description Mitochondrial inner membrane protease subunit 2 OS=Bos taurus GN=IMMP2L PE=2 SV=1
trembl
ID B9SQ38
description Mitochondrial inner membrane protease subunit, putative OS=Ricinus communis GN=RCOM_0644380 PE=3 SV=1
Gene Ontology
ID GO:0016020
description mitochondrial inner membrane protease subunit 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11882: 2705-8014 , PASA_asmbl_11883: 5265-7939
cDNA
(Sanger)
(ID:Location)		 030_A04.ab1: 3261-8014

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_146225_010 0.0 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
2 Hb_001052_030 0.0751303185 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
3 Hb_005841_050 0.0843834525 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
4 Hb_000264_020 0.0854739102 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
5 Hb_003326_020 0.0980273398 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
6 Hb_000123_160 0.1014268548 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
7 Hb_000239_030 0.1056776121 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
8 Hb_001386_050 0.1064957079 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
9 Hb_002217_450 0.1126607635 - - PREDICTED: probable prefoldin subunit 3 [Jatropha curcas]
10 Hb_000282_070 0.1131679393 - - PREDICTED: protein REVERSION-TO-ETHYLENE SENSITIVITY1 [Jatropha curcas]
11 Hb_002759_240 0.1134239479 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
12 Hb_000373_180 0.1138728753 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
13 Hb_000236_150 0.1172932001 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
14 Hb_003579_030 0.1178330401 - - phosphatase 2C family protein [Populus trichocarpa]
15 Hb_002298_050 0.1184492391 - - serine/threonine-protein kinase, putative [Ricinus communis]
16 Hb_001157_010 0.118527353 - - deoxyhypusine synthase, putative [Ricinus communis]
17 Hb_000905_180 0.118875277 - - 60S ribosomal protein L31A [Hevea brasiliensis]
18 Hb_062135_020 0.1205868338 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
19 Hb_003185_050 0.120833875 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
20 Hb_002344_070 0.1210458345 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]

Gene co-expression network

sample Hb_146225_010 Hb_146225_010 Hb_001052_030 Hb_001052_030 Hb_146225_010--Hb_001052_030 Hb_005841_050 Hb_005841_050 Hb_146225_010--Hb_005841_050 Hb_000264_020 Hb_000264_020 Hb_146225_010--Hb_000264_020 Hb_003326_020 Hb_003326_020 Hb_146225_010--Hb_003326_020 Hb_000123_160 Hb_000123_160 Hb_146225_010--Hb_000123_160 Hb_000239_030 Hb_000239_030 Hb_146225_010--Hb_000239_030 Hb_002045_230 Hb_002045_230 Hb_001052_030--Hb_002045_230 Hb_000094_110 Hb_000094_110 Hb_001052_030--Hb_000094_110 Hb_001052_030--Hb_005841_050 Hb_002918_140 Hb_002918_140 Hb_001052_030--Hb_002918_140 Hb_001052_030--Hb_000123_160 Hb_002217_450 Hb_002217_450 Hb_005841_050--Hb_002217_450 Hb_001638_020 Hb_001638_020 Hb_005841_050--Hb_001638_020 Hb_001141_030 Hb_001141_030 Hb_005841_050--Hb_001141_030 Hb_017862_010 Hb_017862_010 Hb_005841_050--Hb_017862_010 Hb_021409_090 Hb_021409_090 Hb_005841_050--Hb_021409_090 Hb_000373_180 Hb_000373_180 Hb_000264_020--Hb_000373_180 Hb_000260_310 Hb_000260_310 Hb_000264_020--Hb_000260_310 Hb_000264_020--Hb_005841_050 Hb_001846_070 Hb_001846_070 Hb_000264_020--Hb_001846_070 Hb_002759_240 Hb_002759_240 Hb_000264_020--Hb_002759_240 Hb_003185_050 Hb_003185_050 Hb_003326_020--Hb_003185_050 Hb_001157_010 Hb_001157_010 Hb_003326_020--Hb_001157_010 Hb_000567_410 Hb_000567_410 Hb_003326_020--Hb_000567_410 Hb_001076_020 Hb_001076_020 Hb_003326_020--Hb_001076_020 Hb_000193_120 Hb_000193_120 Hb_003326_020--Hb_000193_120 Hb_003326_020--Hb_000239_030 Hb_062135_020 Hb_062135_020 Hb_000123_160--Hb_062135_020 Hb_000976_250 Hb_000976_250 Hb_000123_160--Hb_000976_250 Hb_000318_490 Hb_000318_490 Hb_000123_160--Hb_000318_490 Hb_000236_150 Hb_000236_150 Hb_000123_160--Hb_000236_150 Hb_000001_070 Hb_000001_070 Hb_000123_160--Hb_000001_070 Hb_000115_230 Hb_000115_230 Hb_000239_030--Hb_000115_230 Hb_000239_030--Hb_001157_010 Hb_000915_120 Hb_000915_120 Hb_000239_030--Hb_000915_120 Hb_000239_030--Hb_000236_150 Hb_000239_030--Hb_002217_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.31723 2.09872 1.5473 2.75529 2.3145 4.72722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.90013 27.7105 15.8567 3.56217 2.01976

CAGE analysis