Hb_003326_020

Information

Type -
Description -
Location Contig3326: 22915-29289
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09920g
description POPTRDRAFT_578589; replication family protein
nr
ID XP_012074047.1
description PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
swissprot
ID Q8LFJ8
description Replication protein A 32 kDa subunit B OS=Arabidopsis thaliana GN=RPA2B PE=2 SV=1
trembl
ID A0A067KJH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08660 PE=4 SV=1
Gene Ontology
ID GO:0005634
description replication protein a 32 kda subunit b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34893: 23012-29308
cDNA
(Sanger)
(ID:Location)		 019_H19.ab1: 23014-26490 , 037_I20.ab1: 23014-28767 , 046_O17.ab1: 23014-28761

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003326_020 0.0 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
2 Hb_003185_050 0.0792066566 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
3 Hb_001157_010 0.0793257055 - - deoxyhypusine synthase, putative [Ricinus communis]
4 Hb_000567_410 0.0821536818 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
5 Hb_001076_020 0.0846228229 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
6 Hb_000193_120 0.0847217359 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
7 Hb_000239_030 0.085872452 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
8 Hb_001633_030 0.0908572456 - - -
9 Hb_003579_030 0.0934657741 - - phosphatase 2C family protein [Populus trichocarpa]
10 Hb_017948_010 0.0940776953 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
11 Hb_000331_700 0.0950476361 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
12 Hb_000330_070 0.0952273346 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
13 Hb_000881_080 0.096146363 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000115_230 0.0970987508 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
15 Hb_146225_010 0.0980273398 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
16 Hb_000181_300 0.0986846002 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
17 Hb_001085_120 0.098854286 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
18 Hb_003994_040 0.1000081182 - - -
19 Hb_002999_050 0.1027176611 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
20 Hb_000905_180 0.1035038863 - - 60S ribosomal protein L31A [Hevea brasiliensis]

Gene co-expression network

sample Hb_003326_020 Hb_003326_020 Hb_003185_050 Hb_003185_050 Hb_003326_020--Hb_003185_050 Hb_001157_010 Hb_001157_010 Hb_003326_020--Hb_001157_010 Hb_000567_410 Hb_000567_410 Hb_003326_020--Hb_000567_410 Hb_001076_020 Hb_001076_020 Hb_003326_020--Hb_001076_020 Hb_000193_120 Hb_000193_120 Hb_003326_020--Hb_000193_120 Hb_000239_030 Hb_000239_030 Hb_003326_020--Hb_000239_030 Hb_000349_290 Hb_000349_290 Hb_003185_050--Hb_000349_290 Hb_152910_020 Hb_152910_020 Hb_003185_050--Hb_152910_020 Hb_002374_390 Hb_002374_390 Hb_003185_050--Hb_002374_390 Hb_000905_180 Hb_000905_180 Hb_003185_050--Hb_000905_180 Hb_001016_090 Hb_001016_090 Hb_003185_050--Hb_001016_090 Hb_001314_040 Hb_001314_040 Hb_001157_010--Hb_001314_040 Hb_002876_120 Hb_002876_120 Hb_001157_010--Hb_002876_120 Hb_001157_010--Hb_000239_030 Hb_006569_100 Hb_006569_100 Hb_001157_010--Hb_006569_100 Hb_000530_070 Hb_000530_070 Hb_001157_010--Hb_000530_070 Hb_006478_160 Hb_006478_160 Hb_000567_410--Hb_006478_160 Hb_001085_270 Hb_001085_270 Hb_000567_410--Hb_001085_270 Hb_000093_110 Hb_000093_110 Hb_000567_410--Hb_000093_110 Hb_001085_120 Hb_001085_120 Hb_000567_410--Hb_001085_120 Hb_002811_080 Hb_002811_080 Hb_000567_410--Hb_002811_080 Hb_005063_050 Hb_005063_050 Hb_000567_410--Hb_005063_050 Hb_000224_140 Hb_000224_140 Hb_001076_020--Hb_000224_140 Hb_005463_140 Hb_005463_140 Hb_001076_020--Hb_005463_140 Hb_017948_010 Hb_017948_010 Hb_001076_020--Hb_017948_010 Hb_001076_020--Hb_000193_120 Hb_000181_300 Hb_000181_300 Hb_001076_020--Hb_000181_300 Hb_000193_120--Hb_000181_300 Hb_000103_010 Hb_000103_010 Hb_000193_120--Hb_000103_010 Hb_000012_100 Hb_000012_100 Hb_000193_120--Hb_000012_100 Hb_004156_040 Hb_004156_040 Hb_000193_120--Hb_004156_040 Hb_001634_040 Hb_001634_040 Hb_000193_120--Hb_001634_040 Hb_000193_120--Hb_001016_090 Hb_000115_230 Hb_000115_230 Hb_000239_030--Hb_000115_230 Hb_000915_120 Hb_000915_120 Hb_000239_030--Hb_000915_120 Hb_000236_150 Hb_000236_150 Hb_000239_030--Hb_000236_150 Hb_002217_450 Hb_002217_450 Hb_000239_030--Hb_002217_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.83313 3.22037 3.48339 5.68167 5.18304 4.60635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.045 33.7773 19.0861 6.34208 4.68705

CAGE analysis