Hb_002811_080

Information

Type -
Description -
Location Contig2811: 77901-79784
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08090g
description hypothetical protein
nr
ID XP_006368720.1
description hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9N3L1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08090g PE=4 SV=1
Gene Ontology
ID GO:0000439
description general transcription factor iih subunit 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29395: 77870-80194 , PASA_asmbl_29396: 77919-80194 , PASA_asmbl_29398: 79407-80119
cDNA
(Sanger)
(ID:Location)		 002_K19.ab1: 77870-79924

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_080 0.0 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
2 Hb_000567_410 0.0763813091 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
3 Hb_000331_700 0.0774698227 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
4 Hb_000975_320 0.0777743141 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
5 Hb_002588_010 0.0800020596 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
6 Hb_000330_070 0.0850035848 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
7 Hb_011311_010 0.0864630789 - - 60S ribosomal protein L27C [Hevea brasiliensis]
8 Hb_002909_130 0.0882890203 - - Uncharacterized protein isoform 1 [Theobroma cacao]
9 Hb_006478_160 0.0884711871 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
10 Hb_000735_040 0.0925070662 - - 60S ribosomal protein L32A [Hevea brasiliensis]
11 Hb_003044_090 0.094860264 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
12 Hb_005511_160 0.0952307515 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
13 Hb_000906_040 0.095364832 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
14 Hb_000645_140 0.0957566521 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
15 Hb_011628_040 0.0971511276 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
16 Hb_008921_020 0.0979401219 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
17 Hb_000788_010 0.0979813935 - - 40S ribosomal protein S16A [Hevea brasiliensis]
18 Hb_008948_050 0.0988513357 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
19 Hb_000093_110 0.0994104902 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
20 Hb_000915_120 0.1009364234 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]

Gene co-expression network

sample Hb_002811_080 Hb_002811_080 Hb_000567_410 Hb_000567_410 Hb_002811_080--Hb_000567_410 Hb_000331_700 Hb_000331_700 Hb_002811_080--Hb_000331_700 Hb_000975_320 Hb_000975_320 Hb_002811_080--Hb_000975_320 Hb_002588_010 Hb_002588_010 Hb_002811_080--Hb_002588_010 Hb_000330_070 Hb_000330_070 Hb_002811_080--Hb_000330_070 Hb_011311_010 Hb_011311_010 Hb_002811_080--Hb_011311_010 Hb_006478_160 Hb_006478_160 Hb_000567_410--Hb_006478_160 Hb_001085_270 Hb_001085_270 Hb_000567_410--Hb_001085_270 Hb_000093_110 Hb_000093_110 Hb_000567_410--Hb_000093_110 Hb_001085_120 Hb_001085_120 Hb_000567_410--Hb_001085_120 Hb_005063_050 Hb_005063_050 Hb_000567_410--Hb_005063_050 Hb_003044_090 Hb_003044_090 Hb_000331_700--Hb_003044_090 Hb_000331_700--Hb_002588_010 Hb_000331_700--Hb_000567_410 Hb_000331_700--Hb_011311_010 Hb_007497_030 Hb_007497_030 Hb_000331_700--Hb_007497_030 Hb_012368_020 Hb_012368_020 Hb_000975_320--Hb_012368_020 Hb_000906_040 Hb_000906_040 Hb_000975_320--Hb_000906_040 Hb_005511_160 Hb_005511_160 Hb_000975_320--Hb_005511_160 Hb_011628_040 Hb_011628_040 Hb_000975_320--Hb_011628_040 Hb_004223_040 Hb_004223_040 Hb_000975_320--Hb_004223_040 Hb_000042_260 Hb_000042_260 Hb_002588_010--Hb_000042_260 Hb_002588_010--Hb_011311_010 Hb_002588_010--Hb_000093_110 Hb_019516_100 Hb_019516_100 Hb_002588_010--Hb_019516_100 Hb_007944_040 Hb_007944_040 Hb_002588_010--Hb_007944_040 Hb_000111_340 Hb_000111_340 Hb_002588_010--Hb_000111_340 Hb_005496_010 Hb_005496_010 Hb_000330_070--Hb_005496_010 Hb_000330_070--Hb_000567_410 Hb_003326_020 Hb_003326_020 Hb_000330_070--Hb_003326_020 Hb_000645_140 Hb_000645_140 Hb_000330_070--Hb_000645_140 Hb_001235_110 Hb_001235_110 Hb_000330_070--Hb_001235_110 Hb_002660_030 Hb_002660_030 Hb_011311_010--Hb_002660_030 Hb_026398_010 Hb_026398_010 Hb_011311_010--Hb_026398_010 Hb_011311_010--Hb_007944_040 Hb_004724_160 Hb_004724_160 Hb_011311_010--Hb_004724_160 Hb_002925_030 Hb_002925_030 Hb_011311_010--Hb_002925_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.88056 5.50001 10.1302 6.54779 6.31715 9.693
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6698 49.9399 18.5194 8.36569 3.88989

CAGE analysis