Hb_000975_320

Information

Type -
Description -
Location Contig975: 283502-286842
Sequence    

Annotation

kegg
ID rcu:RCOM_0390850
description DNA binding protein, putative
nr
ID XP_012064983.1
description PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L703
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05664 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64030: 285873-286205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_320 0.0 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
2 Hb_012368_020 0.0631425822 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
3 Hb_000906_040 0.0682844288 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
4 Hb_002811_080 0.0777743141 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
5 Hb_005511_160 0.0833552279 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
6 Hb_011628_040 0.0917162409 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
7 Hb_004223_040 0.0948719731 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
8 Hb_001979_040 0.0957069256 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
9 Hb_000331_700 0.0958326408 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
10 Hb_000035_370 0.0966436305 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003044_090 0.0974250227 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
12 Hb_001047_230 0.0986296569 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_006478_160 0.102213258 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
14 Hb_008921_020 0.1026372653 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
15 Hb_003641_020 0.1026666468 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
16 Hb_005063_050 0.1036038077 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
17 Hb_002588_010 0.1049326286 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
18 Hb_006925_040 0.10549072 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
19 Hb_001141_140 0.1070000442 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
20 Hb_000567_410 0.1084199672 - - hypothetical protein JCGZ_12784 [Jatropha curcas]

Gene co-expression network

sample Hb_000975_320 Hb_000975_320 Hb_012368_020 Hb_012368_020 Hb_000975_320--Hb_012368_020 Hb_000906_040 Hb_000906_040 Hb_000975_320--Hb_000906_040 Hb_002811_080 Hb_002811_080 Hb_000975_320--Hb_002811_080 Hb_005511_160 Hb_005511_160 Hb_000975_320--Hb_005511_160 Hb_011628_040 Hb_011628_040 Hb_000975_320--Hb_011628_040 Hb_004223_040 Hb_004223_040 Hb_000975_320--Hb_004223_040 Hb_003641_020 Hb_003641_020 Hb_012368_020--Hb_003641_020 Hb_012368_020--Hb_005511_160 Hb_001314_100 Hb_001314_100 Hb_012368_020--Hb_001314_100 Hb_000062_650 Hb_000062_650 Hb_012368_020--Hb_000062_650 Hb_134949_020 Hb_134949_020 Hb_012368_020--Hb_134949_020 Hb_000574_160 Hb_000574_160 Hb_000906_040--Hb_000574_160 Hb_002235_350 Hb_002235_350 Hb_000906_040--Hb_002235_350 Hb_001780_040 Hb_001780_040 Hb_000906_040--Hb_001780_040 Hb_002768_030 Hb_002768_030 Hb_000906_040--Hb_002768_030 Hb_000906_040--Hb_012368_020 Hb_000567_410 Hb_000567_410 Hb_002811_080--Hb_000567_410 Hb_000331_700 Hb_000331_700 Hb_002811_080--Hb_000331_700 Hb_002588_010 Hb_002588_010 Hb_002811_080--Hb_002588_010 Hb_000330_070 Hb_000330_070 Hb_002811_080--Hb_000330_070 Hb_011311_010 Hb_011311_010 Hb_002811_080--Hb_011311_010 Hb_005511_160--Hb_011628_040 Hb_002259_070 Hb_002259_070 Hb_005511_160--Hb_002259_070 Hb_001979_040 Hb_001979_040 Hb_005511_160--Hb_001979_040 Hb_003656_070 Hb_003656_070 Hb_005511_160--Hb_003656_070 Hb_003203_040 Hb_003203_040 Hb_005511_160--Hb_003203_040 Hb_007416_030 Hb_007416_030 Hb_005511_160--Hb_007416_030 Hb_011628_040--Hb_003203_040 Hb_003893_050 Hb_003893_050 Hb_011628_040--Hb_003893_050 Hb_001505_020 Hb_001505_020 Hb_011628_040--Hb_001505_020 Hb_001214_160 Hb_001214_160 Hb_011628_040--Hb_001214_160 Hb_005063_050 Hb_005063_050 Hb_011628_040--Hb_005063_050 Hb_011236_010 Hb_011236_010 Hb_004223_040--Hb_011236_010 Hb_008921_020 Hb_008921_020 Hb_004223_040--Hb_008921_020 Hb_004223_040--Hb_012368_020 Hb_007044_130 Hb_007044_130 Hb_004223_040--Hb_007044_130 Hb_000735_040 Hb_000735_040 Hb_004223_040--Hb_000735_040 Hb_004223_040--Hb_000062_650
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.457534 0.444605 0.650959 0.415525 0.475135 0.58043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.883124 2.4049 1.00115 0.288283 0.222898

CAGE analysis