Hb_000330_070

Information

Type -
Description -
Location Contig330: 51540-55123
Sequence    

Annotation

kegg
ID cmo:103487987
description proteasome subunit alpha type-1-B-like
nr
ID XP_012446542.1
description PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
swissprot
ID O23712
description Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2
trembl
ID A0A0D2S948
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G272200 PE=4 SV=1
Gene Ontology
ID GO:0019773
description proteasome subunit alpha type-1-b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34695: 51684-55133 , PASA_asmbl_34697: 54435-54706
cDNA
(Sanger)
(ID:Location)		 022_P09.ab1: 54992-55128

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000330_070 0.0 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
2 Hb_002811_080 0.0850035848 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
3 Hb_005496_010 0.0883603072 - - PREDICTED: PXMP2/4 family protein 4 [Jatropha curcas]
4 Hb_000567_410 0.0919794589 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
5 Hb_003326_020 0.0952273346 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
6 Hb_000645_140 0.0973685407 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
7 Hb_001235_110 0.1005147638 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
8 Hb_000239_030 0.104465637 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
9 Hb_004375_140 0.1056034451 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
10 Hb_001157_010 0.1057033316 - - deoxyhypusine synthase, putative [Ricinus communis]
11 Hb_005063_050 0.1071538176 - - PREDICTED: probable prefoldin subunit 4 isoform X1 [Jatropha curcas]
12 Hb_002999_050 0.1077689967 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
13 Hb_008948_050 0.1087646548 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
14 Hb_000193_120 0.1126201807 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
15 Hb_000453_120 0.1126512415 - - PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]
16 Hb_003203_040 0.1128105462 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
17 Hb_001085_120 0.1151323291 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
18 Hb_000975_320 0.1154093002 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
19 Hb_000103_010 0.1165055982 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
20 Hb_005511_160 0.1166405831 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]

Gene co-expression network

sample Hb_000330_070 Hb_000330_070 Hb_002811_080 Hb_002811_080 Hb_000330_070--Hb_002811_080 Hb_005496_010 Hb_005496_010 Hb_000330_070--Hb_005496_010 Hb_000567_410 Hb_000567_410 Hb_000330_070--Hb_000567_410 Hb_003326_020 Hb_003326_020 Hb_000330_070--Hb_003326_020 Hb_000645_140 Hb_000645_140 Hb_000330_070--Hb_000645_140 Hb_001235_110 Hb_001235_110 Hb_000330_070--Hb_001235_110 Hb_002811_080--Hb_000567_410 Hb_000331_700 Hb_000331_700 Hb_002811_080--Hb_000331_700 Hb_000975_320 Hb_000975_320 Hb_002811_080--Hb_000975_320 Hb_002588_010 Hb_002588_010 Hb_002811_080--Hb_002588_010 Hb_011311_010 Hb_011311_010 Hb_002811_080--Hb_011311_010 Hb_150196_010 Hb_150196_010 Hb_005496_010--Hb_150196_010 Hb_000175_060 Hb_000175_060 Hb_005496_010--Hb_000175_060 Hb_000239_030 Hb_000239_030 Hb_005496_010--Hb_000239_030 Hb_008772_010 Hb_008772_010 Hb_005496_010--Hb_008772_010 Hb_000453_120 Hb_000453_120 Hb_005496_010--Hb_000453_120 Hb_006478_160 Hb_006478_160 Hb_000567_410--Hb_006478_160 Hb_001085_270 Hb_001085_270 Hb_000567_410--Hb_001085_270 Hb_000093_110 Hb_000093_110 Hb_000567_410--Hb_000093_110 Hb_001085_120 Hb_001085_120 Hb_000567_410--Hb_001085_120 Hb_005063_050 Hb_005063_050 Hb_000567_410--Hb_005063_050 Hb_003185_050 Hb_003185_050 Hb_003326_020--Hb_003185_050 Hb_001157_010 Hb_001157_010 Hb_003326_020--Hb_001157_010 Hb_003326_020--Hb_000567_410 Hb_001076_020 Hb_001076_020 Hb_003326_020--Hb_001076_020 Hb_000193_120 Hb_000193_120 Hb_003326_020--Hb_000193_120 Hb_003326_020--Hb_000239_030 Hb_008948_050 Hb_008948_050 Hb_000645_140--Hb_008948_050 Hb_000645_140--Hb_000093_110 Hb_000645_140--Hb_002588_010 Hb_000062_390 Hb_000062_390 Hb_000645_140--Hb_000062_390 Hb_000645_140--Hb_000567_410 Hb_019516_100 Hb_019516_100 Hb_000645_140--Hb_019516_100 Hb_000069_700 Hb_000069_700 Hb_001235_110--Hb_000069_700 Hb_001172_120 Hb_001172_120 Hb_001235_110--Hb_001172_120 Hb_000802_100 Hb_000802_100 Hb_001235_110--Hb_000802_100 Hb_116349_110 Hb_116349_110 Hb_001235_110--Hb_116349_110 Hb_001235_110--Hb_000975_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.8598 6.80817 26.1727 18.9162 19.2396 17.2368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.7047 120.656 62.5176 17.753 11.0445

CAGE analysis