Hb_116349_110

Information

Type -
Description -
Location Contig116349: 57436-60747
Sequence    

Annotation

kegg
ID rcu:RCOM_0699820
description Vacuolar protein sorting protein, putative
nr
ID XP_012092015.1
description PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
swissprot
ID Q8VZC9
description Vacuolar protein sorting-associated protein 25 OS=Arabidopsis thaliana GN=VPS25 PE=1 SV=1
trembl
ID A0A067JBX1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21748 PE=4 SV=1
Gene Ontology
ID GO:0000814
description vacuolar protein sorting-associated protein 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05055: 57022-60726
cDNA
(Sanger)
(ID:Location)		 025_F23.ab1: 57022-60431

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_116349_110 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
2 Hb_000645_140 0.0950923376 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
3 Hb_001512_050 0.1005753485 - - copine, putative [Ricinus communis]
4 Hb_002588_010 0.1049580305 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
5 Hb_000975_320 0.1089495201 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
6 Hb_002811_080 0.1119764705 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
7 Hb_000906_040 0.1132803642 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
8 Hb_001235_110 0.1144011307 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
9 Hb_000093_110 0.1163055256 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
10 Hb_008948_050 0.1173724749 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
11 Hb_000331_700 0.124532104 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
12 Hb_000330_070 0.1246269468 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
13 Hb_003044_090 0.1269114772 - - PREDICTED: fruit protein pKIWI502 [Jatropha curcas]
14 Hb_000069_700 0.1279001502 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
15 Hb_004223_040 0.1293172309 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
16 Hb_012368_020 0.1294663568 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
17 Hb_006478_160 0.1309891252 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
18 Hb_000915_120 0.1315205336 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
19 Hb_000450_130 0.1316822112 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
20 Hb_009880_010 0.1350200707 - - PREDICTED: cytochrome c [Jatropha curcas]

Gene co-expression network

sample Hb_116349_110 Hb_116349_110 Hb_000645_140 Hb_000645_140 Hb_116349_110--Hb_000645_140 Hb_001512_050 Hb_001512_050 Hb_116349_110--Hb_001512_050 Hb_002588_010 Hb_002588_010 Hb_116349_110--Hb_002588_010 Hb_000975_320 Hb_000975_320 Hb_116349_110--Hb_000975_320 Hb_002811_080 Hb_002811_080 Hb_116349_110--Hb_002811_080 Hb_000906_040 Hb_000906_040 Hb_116349_110--Hb_000906_040 Hb_008948_050 Hb_008948_050 Hb_000645_140--Hb_008948_050 Hb_000093_110 Hb_000093_110 Hb_000645_140--Hb_000093_110 Hb_000645_140--Hb_002588_010 Hb_000062_390 Hb_000062_390 Hb_000645_140--Hb_000062_390 Hb_000567_410 Hb_000567_410 Hb_000645_140--Hb_000567_410 Hb_019516_100 Hb_019516_100 Hb_000645_140--Hb_019516_100 Hb_007245_080 Hb_007245_080 Hb_001512_050--Hb_007245_080 Hb_000062_650 Hb_000062_650 Hb_001512_050--Hb_000062_650 Hb_000576_060 Hb_000576_060 Hb_001512_050--Hb_000576_060 Hb_001512_050--Hb_002588_010 Hb_004223_040 Hb_004223_040 Hb_001512_050--Hb_004223_040 Hb_000042_260 Hb_000042_260 Hb_002588_010--Hb_000042_260 Hb_011311_010 Hb_011311_010 Hb_002588_010--Hb_011311_010 Hb_002588_010--Hb_000093_110 Hb_002588_010--Hb_019516_100 Hb_007944_040 Hb_007944_040 Hb_002588_010--Hb_007944_040 Hb_000111_340 Hb_000111_340 Hb_002588_010--Hb_000111_340 Hb_012368_020 Hb_012368_020 Hb_000975_320--Hb_012368_020 Hb_000975_320--Hb_000906_040 Hb_000975_320--Hb_002811_080 Hb_005511_160 Hb_005511_160 Hb_000975_320--Hb_005511_160 Hb_011628_040 Hb_011628_040 Hb_000975_320--Hb_011628_040 Hb_000975_320--Hb_004223_040 Hb_002811_080--Hb_000567_410 Hb_000331_700 Hb_000331_700 Hb_002811_080--Hb_000331_700 Hb_002811_080--Hb_002588_010 Hb_000330_070 Hb_000330_070 Hb_002811_080--Hb_000330_070 Hb_002811_080--Hb_011311_010 Hb_000574_160 Hb_000574_160 Hb_000906_040--Hb_000574_160 Hb_002235_350 Hb_002235_350 Hb_000906_040--Hb_002235_350 Hb_001780_040 Hb_001780_040 Hb_000906_040--Hb_001780_040 Hb_002768_030 Hb_002768_030 Hb_000906_040--Hb_002768_030 Hb_000906_040--Hb_012368_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.1093 35.7198 54.6463 32.4166 27.5422 23.3515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
91.0815 254.873 87.9722 20.031 15.0963

CAGE analysis