Hb_007245_080

Information

Type -
Description -
Location Contig7245: 76281-77325
Sequence    

Annotation

kegg
ID rcu:RCOM_0528610
description hypothetical protein
nr
ID XP_012085372.1
description PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SHB5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0528610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55823: 77362-77599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007245_080 0.0 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
2 Hb_009476_020 0.0668710296 - - tryptophan biosynthesis protein, putative [Ricinus communis]
3 Hb_002235_080 0.0826433064 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
4 Hb_001789_050 0.0881528758 - - 60S ribosomal protein L36-2 [Morus notabilis]
5 Hb_000576_060 0.0903314517 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
6 Hb_000735_040 0.092726832 - - 60S ribosomal protein L32A [Hevea brasiliensis]
7 Hb_007120_090 0.0947487046 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
8 Hb_003929_150 0.0968020052 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
9 Hb_001512_050 0.0976701996 - - copine, putative [Ricinus communis]
10 Hb_002811_090 0.0993261937 - - 40S ribosomal protein S24A [Hevea brasiliensis]
11 Hb_000506_070 0.1009966426 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
12 Hb_008921_020 0.1012785116 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
13 Hb_004223_040 0.101951262 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
14 Hb_000997_120 0.104528356 - - 40S ribosomal protein S15E [Hevea brasiliensis]
15 Hb_000212_210 0.1063601886 - - unnamed protein product [Coffea canephora]
16 Hb_002006_130 0.1072219527 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
17 Hb_000093_110 0.1077457513 - - PREDICTED: cytochrome b5 isoform A [Jatropha curcas]
18 Hb_000788_010 0.108513863 - - 40S ribosomal protein S16A [Hevea brasiliensis]
19 Hb_004543_040 0.1086755157 - - ABC transporter family protein [Hevea brasiliensis]
20 Hb_000062_650 0.1088473017 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]

Gene co-expression network

sample Hb_007245_080 Hb_007245_080 Hb_009476_020 Hb_009476_020 Hb_007245_080--Hb_009476_020 Hb_002235_080 Hb_002235_080 Hb_007245_080--Hb_002235_080 Hb_001789_050 Hb_001789_050 Hb_007245_080--Hb_001789_050 Hb_000576_060 Hb_000576_060 Hb_007245_080--Hb_000576_060 Hb_000735_040 Hb_000735_040 Hb_007245_080--Hb_000735_040 Hb_007120_090 Hb_007120_090 Hb_007245_080--Hb_007120_090 Hb_000506_070 Hb_000506_070 Hb_009476_020--Hb_000506_070 Hb_009476_020--Hb_000735_040 Hb_174865_010 Hb_174865_010 Hb_009476_020--Hb_174865_010 Hb_000676_160 Hb_000676_160 Hb_009476_020--Hb_000676_160 Hb_003018_020 Hb_003018_020 Hb_009476_020--Hb_003018_020 Hb_003929_150 Hb_003929_150 Hb_002235_080--Hb_003929_150 Hb_006478_160 Hb_006478_160 Hb_002235_080--Hb_006478_160 Hb_000093_110 Hb_000093_110 Hb_002235_080--Hb_000093_110 Hb_000788_010 Hb_000788_010 Hb_002235_080--Hb_000788_010 Hb_008921_020 Hb_008921_020 Hb_002235_080--Hb_008921_020 Hb_001789_050--Hb_007120_090 Hb_001789_050--Hb_000576_060 Hb_000997_120 Hb_000997_120 Hb_001789_050--Hb_000997_120 Hb_000212_210 Hb_000212_210 Hb_001789_050--Hb_000212_210 Hb_001789_050--Hb_000676_160 Hb_000576_060--Hb_008921_020 Hb_000576_060--Hb_000735_040 Hb_000062_650 Hb_000062_650 Hb_000576_060--Hb_000062_650 Hb_000576_060--Hb_000788_010 Hb_001141_140 Hb_001141_140 Hb_000576_060--Hb_001141_140 Hb_000735_040--Hb_174865_010 Hb_000735_040--Hb_000506_070 Hb_000735_040--Hb_001141_140 Hb_000735_040--Hb_000093_110 Hb_000735_040--Hb_008921_020 Hb_000735_040--Hb_003018_020 Hb_007120_090--Hb_000997_120 Hb_002838_030 Hb_002838_030 Hb_007120_090--Hb_002838_030 Hb_000948_220 Hb_000948_220 Hb_007120_090--Hb_000948_220 Hb_007120_090--Hb_000676_160 Hb_012395_130 Hb_012395_130 Hb_007120_090--Hb_012395_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.56187 10.4827 14.2269 17.6263 7.15253 10.661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.4061 70.4088 12.256 12.9829 5.49557

CAGE analysis