Hb_000212_210

Information

Type -
Description -
Location Contig212: 242055-244079
Sequence    

Annotation

kegg
ID mus:103972498
description 60S ribosomal protein L38
nr
ID CDP18171.1
description unnamed protein product [Coffea canephora]
swissprot
ID O22860
description 60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=3 SV=1
trembl
ID A0A068VBT7
description Coffea canephora DH200=94 genomic scaffold, scaffold_218 OS=Coffea canephora GN=GSCOC_T00007069001 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l38

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21946: 242051-244074
cDNA
(Sanger)
(ID:Location)		 014_N06.ab1: 242133-244074 , 033_J18.ab1: 242122-244074 , 037_O21.ab1: 242126-244074 , 047_I23.ab1: 242051-244074 , 048_J24.ab1: 242067-244074

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000212_210 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_002811_090 0.0846486938 - - 40S ribosomal protein S24A [Hevea brasiliensis]
3 Hb_003057_020 0.0854208492 - - 40S ribosomal protein S23, putative [Ricinus communis]
4 Hb_001789_050 0.0914095894 - - 60S ribosomal protein L36-2 [Morus notabilis]
5 Hb_007120_090 0.1012051967 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
6 Hb_000042_260 0.1025508293 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
7 Hb_000272_050 0.1053319661 - - hypothetical protein JCGZ_03991 [Jatropha curcas]
8 Hb_007245_080 0.1063601886 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
9 Hb_019516_100 0.1118780191 - - 40S ribosomal protein S14, putative [Ricinus communis]
10 Hb_027472_160 0.1194534334 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
11 Hb_000997_120 0.1200993252 - - 40S ribosomal protein S15E [Hevea brasiliensis]
12 Hb_009476_020 0.1210977941 - - tryptophan biosynthesis protein, putative [Ricinus communis]
13 Hb_000329_020 0.1232469081 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
14 Hb_001512_050 0.1245821923 - - copine, putative [Ricinus communis]
15 Hb_172221_010 0.1270409941 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
16 Hb_000576_060 0.1273216415 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
17 Hb_000454_180 0.1273607005 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
18 Hb_012251_010 0.1282157515 - - -
19 Hb_000062_650 0.1285627866 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
20 Hb_007885_010 0.1295002165 - - 60S ribosomal protein L24-1 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000212_210 Hb_000212_210 Hb_002811_090 Hb_002811_090 Hb_000212_210--Hb_002811_090 Hb_003057_020 Hb_003057_020 Hb_000212_210--Hb_003057_020 Hb_001789_050 Hb_001789_050 Hb_000212_210--Hb_001789_050 Hb_007120_090 Hb_007120_090 Hb_000212_210--Hb_007120_090 Hb_000042_260 Hb_000042_260 Hb_000212_210--Hb_000042_260 Hb_000272_050 Hb_000272_050 Hb_000212_210--Hb_000272_050 Hb_002811_090--Hb_003057_020 Hb_002811_090--Hb_007120_090 Hb_027472_160 Hb_027472_160 Hb_002811_090--Hb_027472_160 Hb_002811_090--Hb_001789_050 Hb_007245_080 Hb_007245_080 Hb_002811_090--Hb_007245_080 Hb_000454_180 Hb_000454_180 Hb_003057_020--Hb_000454_180 Hb_003057_020--Hb_027472_160 Hb_003057_020--Hb_001789_050 Hb_003057_020--Hb_007120_090 Hb_001789_050--Hb_007120_090 Hb_000576_060 Hb_000576_060 Hb_001789_050--Hb_000576_060 Hb_000997_120 Hb_000997_120 Hb_001789_050--Hb_000997_120 Hb_001789_050--Hb_007245_080 Hb_000676_160 Hb_000676_160 Hb_001789_050--Hb_000676_160 Hb_007120_090--Hb_000997_120 Hb_002838_030 Hb_002838_030 Hb_007120_090--Hb_002838_030 Hb_000948_220 Hb_000948_220 Hb_007120_090--Hb_000948_220 Hb_007120_090--Hb_000676_160 Hb_012395_130 Hb_012395_130 Hb_007120_090--Hb_012395_130 Hb_019516_100 Hb_019516_100 Hb_000042_260--Hb_019516_100 Hb_172221_010 Hb_172221_010 Hb_000042_260--Hb_172221_010 Hb_002588_010 Hb_002588_010 Hb_000042_260--Hb_002588_010 Hb_002909_130 Hb_002909_130 Hb_000042_260--Hb_002909_130 Hb_000329_020 Hb_000329_020 Hb_000042_260--Hb_000329_020 Hb_026398_010 Hb_026398_010 Hb_000042_260--Hb_026398_010 Hb_001221_310 Hb_001221_310 Hb_000272_050--Hb_001221_310 Hb_003226_220 Hb_003226_220 Hb_000272_050--Hb_003226_220 Hb_000272_050--Hb_000042_260 Hb_000272_050--Hb_019516_100 Hb_000272_050--Hb_026398_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
115.997 43.268 143.026 164.354 85.3962 133.214
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
286.465 921.286 93.5792 125.784 44.0476

CAGE analysis