Hb_003057_020

Information

Type -
Description -
Location Contig3057: 9345-11178
Sequence    

Annotation

kegg
ID rcu:RCOM_0819610
description 40S ribosomal protein S23, putative
nr
ID XP_002523902.1
description 40S ribosomal protein S23, putative [Ricinus communis]
swissprot
ID P46297
description 40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1
trembl
ID A0A067K9V2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16464 PE=3 SV=1
Gene Ontology
ID GO:0015935
description 40s ribosomal protein s23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32284: 9405-11174
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003057_020 0.0 - - 40S ribosomal protein S23, putative [Ricinus communis]
2 Hb_002811_090 0.0824109461 - - 40S ribosomal protein S24A [Hevea brasiliensis]
3 Hb_000212_210 0.0854208492 - - unnamed protein product [Coffea canephora]
4 Hb_000454_180 0.096734852 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
5 Hb_027472_160 0.1128785659 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
6 Hb_001789_050 0.1160968971 - - 60S ribosomal protein L36-2 [Morus notabilis]
7 Hb_007120_090 0.1178554689 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
8 Hb_007313_080 0.1220986034 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
9 Hb_000289_070 0.1280026054 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007245_080 0.1329378451 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
11 Hb_000948_220 0.1353440909 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
12 Hb_154141_030 0.1356188785 - - PREDICTED: histone H2AX [Populus euphratica]
13 Hb_003020_330 0.1380136196 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
14 Hb_000768_130 0.1410385252 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
15 Hb_002838_030 0.1434445188 - - 40S ribosomal protein S25A [Hevea brasiliensis]
16 Hb_000272_050 0.1437183707 - - hypothetical protein JCGZ_03991 [Jatropha curcas]
17 Hb_000997_120 0.1450715696 - - 40S ribosomal protein S15E [Hevea brasiliensis]
18 Hb_000203_020 0.1464560872 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
19 Hb_000042_260 0.1464581892 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
20 Hb_012251_010 0.1500270529 - - -

Gene co-expression network

sample Hb_003057_020 Hb_003057_020 Hb_002811_090 Hb_002811_090 Hb_003057_020--Hb_002811_090 Hb_000212_210 Hb_000212_210 Hb_003057_020--Hb_000212_210 Hb_000454_180 Hb_000454_180 Hb_003057_020--Hb_000454_180 Hb_027472_160 Hb_027472_160 Hb_003057_020--Hb_027472_160 Hb_001789_050 Hb_001789_050 Hb_003057_020--Hb_001789_050 Hb_007120_090 Hb_007120_090 Hb_003057_020--Hb_007120_090 Hb_002811_090--Hb_000212_210 Hb_002811_090--Hb_007120_090 Hb_002811_090--Hb_027472_160 Hb_002811_090--Hb_001789_050 Hb_007245_080 Hb_007245_080 Hb_002811_090--Hb_007245_080 Hb_000212_210--Hb_001789_050 Hb_000212_210--Hb_007120_090 Hb_000042_260 Hb_000042_260 Hb_000212_210--Hb_000042_260 Hb_000272_050 Hb_000272_050 Hb_000212_210--Hb_000272_050 Hb_000599_280 Hb_000599_280 Hb_000454_180--Hb_000599_280 Hb_006588_080 Hb_006588_080 Hb_000454_180--Hb_006588_080 Hb_007313_080 Hb_007313_080 Hb_000454_180--Hb_007313_080 Hb_011377_020 Hb_011377_020 Hb_000454_180--Hb_011377_020 Hb_000454_180--Hb_007120_090 Hb_003020_330 Hb_003020_330 Hb_027472_160--Hb_003020_330 Hb_000645_140 Hb_000645_140 Hb_027472_160--Hb_000645_140 Hb_000915_120 Hb_000915_120 Hb_027472_160--Hb_000915_120 Hb_000948_220 Hb_000948_220 Hb_027472_160--Hb_000948_220 Hb_027472_160--Hb_007120_090 Hb_001789_050--Hb_007120_090 Hb_000576_060 Hb_000576_060 Hb_001789_050--Hb_000576_060 Hb_000997_120 Hb_000997_120 Hb_001789_050--Hb_000997_120 Hb_001789_050--Hb_007245_080 Hb_000676_160 Hb_000676_160 Hb_001789_050--Hb_000676_160 Hb_007120_090--Hb_000997_120 Hb_002838_030 Hb_002838_030 Hb_007120_090--Hb_002838_030 Hb_007120_090--Hb_000948_220 Hb_007120_090--Hb_000676_160 Hb_012395_130 Hb_012395_130 Hb_007120_090--Hb_012395_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.4259 18.4012 77.6781 117.308 34.8782 41.0165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
159.199 571.266 52.6916 73.3508 42.7443

CAGE analysis