Hb_007313_080

Information

Type -
Description -
Location Contig7313: 67171-68224
Sequence    

Annotation

kegg
ID cic:CICLE_v10002804mg
description hypothetical protein
nr
ID XP_006433236.1
description hypothetical protein CICLE_v10002804mg [Citrus clementina]
swissprot
ID O65759
description Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1
trembl
ID V4TA53
description Histone H2A OS=Citrus clementina GN=CICLE_v10002804mg PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h2ax

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56028: 67181-68209
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007313_080 0.0 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
2 Hb_000768_130 0.0886145367 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
3 Hb_003020_330 0.0905650237 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
4 Hb_000454_180 0.1013176633 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
5 Hb_002900_130 0.1109708874 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
6 Hb_154141_030 0.1126524999 - - PREDICTED: histone H2AX [Populus euphratica]
7 Hb_027472_160 0.1216150935 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
8 Hb_003057_020 0.1220986034 - - 40S ribosomal protein S23, putative [Ricinus communis]
9 Hb_007120_090 0.1223823191 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
10 Hb_009778_040 0.1228402025 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
11 Hb_002838_030 0.1285726968 - - 40S ribosomal protein S25A [Hevea brasiliensis]
12 Hb_000948_220 0.1291521178 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
13 Hb_147752_010 0.132237055 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
14 Hb_005144_070 0.1357851049 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000030_200 0.1380729423 - - PREDICTED: early nodulin-93-like [Populus euphratica]
16 Hb_002811_090 0.139495654 - - 40S ribosomal protein S24A [Hevea brasiliensis]
17 Hb_000997_120 0.1398639168 - - 40S ribosomal protein S15E [Hevea brasiliensis]
18 Hb_007441_260 0.1400236412 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
19 Hb_001105_090 0.1400735232 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
20 Hb_009075_010 0.140846472 - - 60S ribosomal protein L10B [Hevea brasiliensis]

Gene co-expression network

sample Hb_007313_080 Hb_007313_080 Hb_000768_130 Hb_000768_130 Hb_007313_080--Hb_000768_130 Hb_003020_330 Hb_003020_330 Hb_007313_080--Hb_003020_330 Hb_000454_180 Hb_000454_180 Hb_007313_080--Hb_000454_180 Hb_002900_130 Hb_002900_130 Hb_007313_080--Hb_002900_130 Hb_154141_030 Hb_154141_030 Hb_007313_080--Hb_154141_030 Hb_027472_160 Hb_027472_160 Hb_007313_080--Hb_027472_160 Hb_000768_130--Hb_154141_030 Hb_000739_140 Hb_000739_140 Hb_000768_130--Hb_000739_140 Hb_000215_330 Hb_000215_330 Hb_000768_130--Hb_000215_330 Hb_000768_130--Hb_003020_330 Hb_005306_070 Hb_005306_070 Hb_000768_130--Hb_005306_070 Hb_002838_030 Hb_002838_030 Hb_003020_330--Hb_002838_030 Hb_007120_090 Hb_007120_090 Hb_003020_330--Hb_007120_090 Hb_011377_020 Hb_011377_020 Hb_003020_330--Hb_011377_020 Hb_000110_170 Hb_000110_170 Hb_003020_330--Hb_000110_170 Hb_003020_330--Hb_027472_160 Hb_000599_280 Hb_000599_280 Hb_000454_180--Hb_000599_280 Hb_003057_020 Hb_003057_020 Hb_000454_180--Hb_003057_020 Hb_006588_080 Hb_006588_080 Hb_000454_180--Hb_006588_080 Hb_000454_180--Hb_011377_020 Hb_000454_180--Hb_007120_090 Hb_002900_130--Hb_154141_030 Hb_002900_130--Hb_000768_130 Hb_001635_130 Hb_001635_130 Hb_002900_130--Hb_001635_130 Hb_002900_130--Hb_003020_330 Hb_002900_130--Hb_000739_140 Hb_154141_030--Hb_003020_330 Hb_002811_090 Hb_002811_090 Hb_154141_030--Hb_002811_090 Hb_154141_030--Hb_002838_030 Hb_027472_160--Hb_002811_090 Hb_000645_140 Hb_000645_140 Hb_027472_160--Hb_000645_140 Hb_000915_120 Hb_000915_120 Hb_027472_160--Hb_000915_120 Hb_000948_220 Hb_000948_220 Hb_027472_160--Hb_000948_220 Hb_027472_160--Hb_007120_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.21247 4.94581 23.297 27.15 4.28926 7.30415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.0662 112.039 21.2002 26.9987 11.3936

CAGE analysis