Hb_002900_130

Information

Type -
Description -
Location Contig2900: 176586-178212
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20140g
description POPTRDRAFT_833785; 60S ribosomal protein L35a
nr
ID KHG28839.1
description 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
swissprot
ID Q9C912
description 60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=3 SV=1
trembl
ID A0A0B0PWN4
description 60S ribosomal L35a-3-like protein OS=Gossypium arboreum GN=F383_10337 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l35a-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30412: 176588-178201
cDNA
(Sanger)
(ID:Location)		 009_L06.ab1: 176647-178201

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002900_130 0.0 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
2 Hb_154141_030 0.0904629653 - - PREDICTED: histone H2AX [Populus euphratica]
3 Hb_000768_130 0.1103284721 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
4 Hb_007313_080 0.1109708874 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
5 Hb_001635_130 0.1269157961 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
6 Hb_003020_330 0.1284869279 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
7 Hb_000739_140 0.1369510446 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
8 Hb_005054_040 0.1436116173 - - PREDICTED: 60S ribosomal protein L35a-1 [Gossypium raimondii]
9 Hb_005306_070 0.1548130455 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
10 Hb_003057_020 0.1564614372 - - 40S ribosomal protein S23, putative [Ricinus communis]
11 Hb_000454_180 0.1568250014 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
12 Hb_027684_020 0.1574883659 - - ribosomal protein S10 (mitochondrion) [Nicotiana tabacum]
13 Hb_000030_200 0.1586591681 - - PREDICTED: early nodulin-93-like [Populus euphratica]
14 Hb_007120_090 0.1588985828 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
15 Hb_000215_330 0.1603371118 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
16 Hb_002811_090 0.1608821001 - - 40S ribosomal protein S24A [Hevea brasiliensis]
17 Hb_009075_010 0.161678551 - - 60S ribosomal protein L10B [Hevea brasiliensis]
18 Hb_005054_260 0.1628231188 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
19 Hb_002838_030 0.1636035528 - - 40S ribosomal protein S25A [Hevea brasiliensis]
20 Hb_000291_270 0.1669404346 - - hypothetical protein JCGZ_12006 [Jatropha curcas]

Gene co-expression network

sample Hb_002900_130 Hb_002900_130 Hb_154141_030 Hb_154141_030 Hb_002900_130--Hb_154141_030 Hb_000768_130 Hb_000768_130 Hb_002900_130--Hb_000768_130 Hb_007313_080 Hb_007313_080 Hb_002900_130--Hb_007313_080 Hb_001635_130 Hb_001635_130 Hb_002900_130--Hb_001635_130 Hb_003020_330 Hb_003020_330 Hb_002900_130--Hb_003020_330 Hb_000739_140 Hb_000739_140 Hb_002900_130--Hb_000739_140 Hb_154141_030--Hb_000768_130 Hb_154141_030--Hb_003020_330 Hb_154141_030--Hb_007313_080 Hb_002811_090 Hb_002811_090 Hb_154141_030--Hb_002811_090 Hb_002838_030 Hb_002838_030 Hb_154141_030--Hb_002838_030 Hb_000768_130--Hb_007313_080 Hb_000768_130--Hb_000739_140 Hb_000215_330 Hb_000215_330 Hb_000768_130--Hb_000215_330 Hb_000768_130--Hb_003020_330 Hb_005306_070 Hb_005306_070 Hb_000768_130--Hb_005306_070 Hb_007313_080--Hb_003020_330 Hb_000454_180 Hb_000454_180 Hb_007313_080--Hb_000454_180 Hb_027472_160 Hb_027472_160 Hb_007313_080--Hb_027472_160 Hb_027684_020 Hb_027684_020 Hb_001635_130--Hb_027684_020 Hb_001635_130--Hb_154141_030 Hb_005054_040 Hb_005054_040 Hb_001635_130--Hb_005054_040 Hb_001301_050 Hb_001301_050 Hb_001635_130--Hb_001301_050 Hb_002631_260 Hb_002631_260 Hb_001635_130--Hb_002631_260 Hb_003020_330--Hb_002838_030 Hb_007120_090 Hb_007120_090 Hb_003020_330--Hb_007120_090 Hb_011377_020 Hb_011377_020 Hb_003020_330--Hb_011377_020 Hb_000110_170 Hb_000110_170 Hb_003020_330--Hb_000110_170 Hb_003020_330--Hb_027472_160 Hb_009075_010 Hb_009075_010 Hb_000739_140--Hb_009075_010 Hb_005054_260 Hb_005054_260 Hb_000739_140--Hb_005054_260 Hb_000739_140--Hb_005306_070 Hb_001053_140 Hb_001053_140 Hb_000739_140--Hb_001053_140 Hb_001410_060 Hb_001410_060 Hb_000739_140--Hb_001410_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2531 13.609 46.8634 123.839 5.8975 30.1514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
107.325 335.818 52.2455 89.7827 53.2176

CAGE analysis