Hb_001301_050

Information

Type -
Description -
Location Contig1301: 49117-50873
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_050 0.0 - - -
2 Hb_003494_050 0.1205987615 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
3 Hb_006573_020 0.1258666189 - - PREDICTED: 40S ribosomal protein S10-like [Jatropha curcas]
4 Hb_024758_010 0.126579774 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
5 Hb_001635_130 0.1345337911 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
6 Hb_023711_010 0.1355713148 - - -
7 Hb_000302_280 0.1401161385 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
8 Hb_003376_190 0.1407227896 - - syntaxin, putative [Ricinus communis]
9 Hb_027684_020 0.1427612774 - - ribosomal protein S10 (mitochondrion) [Nicotiana tabacum]
10 Hb_009680_020 0.1433964084 - - PREDICTED: 40S ribosomal protein S10 [Jatropha curcas]
11 Hb_005307_050 0.1437024343 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
12 Hb_001242_140 0.1447439088 - - mitochondrial carrier protein, putative [Ricinus communis]
13 Hb_016734_070 0.144806898 - - hypothetical_protein [Oryza brachyantha]
14 Hb_087749_010 0.1448189412 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
15 Hb_000808_190 0.1464446501 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
16 Hb_007065_010 0.1501075124 - - hypothetical protein Csa_3G379730 [Cucumis sativus]
17 Hb_000175_320 0.1507712385 - - PREDICTED: formin-like protein 14 [Jatropha curcas]
18 Hb_186982_040 0.1508256374 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
19 Hb_000735_090 0.1515517757 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
20 Hb_000215_330 0.1516450667 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]

Gene co-expression network

sample Hb_001301_050 Hb_001301_050 Hb_003494_050 Hb_003494_050 Hb_001301_050--Hb_003494_050 Hb_006573_020 Hb_006573_020 Hb_001301_050--Hb_006573_020 Hb_024758_010 Hb_024758_010 Hb_001301_050--Hb_024758_010 Hb_001635_130 Hb_001635_130 Hb_001301_050--Hb_001635_130 Hb_023711_010 Hb_023711_010 Hb_001301_050--Hb_023711_010 Hb_000302_280 Hb_000302_280 Hb_001301_050--Hb_000302_280 Hb_000735_090 Hb_000735_090 Hb_003494_050--Hb_000735_090 Hb_007747_050 Hb_007747_050 Hb_003494_050--Hb_007747_050 Hb_003494_050--Hb_006573_020 Hb_001373_060 Hb_001373_060 Hb_003494_050--Hb_001373_060 Hb_005269_080 Hb_005269_080 Hb_003494_050--Hb_005269_080 Hb_002811_170 Hb_002811_170 Hb_003494_050--Hb_002811_170 Hb_000808_190 Hb_000808_190 Hb_006573_020--Hb_000808_190 Hb_001057_040 Hb_001057_040 Hb_006573_020--Hb_001057_040 Hb_000002_380 Hb_000002_380 Hb_006573_020--Hb_000002_380 Hb_186982_040 Hb_186982_040 Hb_006573_020--Hb_186982_040 Hb_000005_090 Hb_000005_090 Hb_006573_020--Hb_000005_090 Hb_001284_030 Hb_001284_030 Hb_024758_010--Hb_001284_030 Hb_000046_350 Hb_000046_350 Hb_024758_010--Hb_000046_350 Hb_001252_210 Hb_001252_210 Hb_024758_010--Hb_001252_210 Hb_001353_010 Hb_001353_010 Hb_024758_010--Hb_001353_010 Hb_002878_010 Hb_002878_010 Hb_024758_010--Hb_002878_010 Hb_027684_020 Hb_027684_020 Hb_001635_130--Hb_027684_020 Hb_002900_130 Hb_002900_130 Hb_001635_130--Hb_002900_130 Hb_154141_030 Hb_154141_030 Hb_001635_130--Hb_154141_030 Hb_005054_040 Hb_005054_040 Hb_001635_130--Hb_005054_040 Hb_002631_260 Hb_002631_260 Hb_001635_130--Hb_002631_260 Hb_000175_320 Hb_000175_320 Hb_023711_010--Hb_000175_320 Hb_000753_190 Hb_000753_190 Hb_023711_010--Hb_000753_190 Hb_086639_090 Hb_086639_090 Hb_023711_010--Hb_086639_090 Hb_000184_100 Hb_000184_100 Hb_023711_010--Hb_000184_100 Hb_000599_280 Hb_000599_280 Hb_023711_010--Hb_000599_280 Hb_072922_020 Hb_072922_020 Hb_000302_280--Hb_072922_020 Hb_005463_140 Hb_005463_140 Hb_000302_280--Hb_005463_140 Hb_001369_170 Hb_001369_170 Hb_000302_280--Hb_001369_170 Hb_000384_120 Hb_000384_120 Hb_000302_280--Hb_000384_120 Hb_003376_190 Hb_003376_190 Hb_000302_280--Hb_003376_190 Hb_000707_020 Hb_000707_020 Hb_000302_280--Hb_000707_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.80228 0.726818 1.47251 6.22199 1.54008 4.48209
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.47829 12.7781 2.28315 4.48073 4.16224

CAGE analysis