Hb_001252_210

Information

Type -
Description -
Location Contig1252: 300345-303345
Sequence    

Annotation

kegg
ID cit:102611254
description glycine cleavage system H protein 2, mitochondrial-like
nr
ID XP_012089659.1
description PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
swissprot
ID O82179
description Glycine cleavage system H protein 2, mitochondrial OS=Arabidopsis thaliana GN=GDH2 PE=2 SV=1
trembl
ID A0A067JGE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01773 PE=3 SV=1
Gene Ontology
ID GO:0005960
description glycine cleavage system h protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07756: 300352-303382 , PASA_asmbl_07757: 300352-303348
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001252_210 0.0 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]
2 Hb_002284_230 0.0991509898 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
3 Hb_000574_130 0.102646912 - - calcineurin-like protein [Hevea brasiliensis]
4 Hb_003894_080 0.1047533121 - - PREDICTED: protein cornichon homolog 4 [Vitis vinifera]
5 Hb_000046_350 0.1137371154 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000733_080 0.1156299969 - - PREDICTED: uncharacterized protein LOC105646960 [Jatropha curcas]
7 Hb_019762_020 0.1169820043 - - PREDICTED: selenoprotein K-like [Nicotiana tomentosiformis]
8 Hb_000028_350 0.1183710277 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
9 Hb_000563_200 0.1185598876 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
10 Hb_003126_070 0.1186633226 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
11 Hb_000336_240 0.1194051003 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
12 Hb_000363_360 0.1202827895 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
13 Hb_001638_320 0.123672715 - - hypothetical protein POPTR_0014s10150g [Populus trichocarpa]
14 Hb_024758_010 0.1240741577 - - PREDICTED: uncharacterized protein At2g23090-like [Jatropha curcas]
15 Hb_001353_010 0.1241895015 - - PREDICTED: cytochrome c oxidase assembly protein COX11, mitochondrial [Jatropha curcas]
16 Hb_000985_060 0.1248476002 - - PREDICTED: protein transport protein SFT2-like isoform X1 [Jatropha curcas]
17 Hb_002735_050 0.1253878297 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X1 [Jatropha curcas]
18 Hb_007009_010 0.1257004501 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
19 Hb_003697_050 0.125960116 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
20 Hb_001284_030 0.1260898086 - - Coiled-coil domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001252_210 Hb_001252_210 Hb_002284_230 Hb_002284_230 Hb_001252_210--Hb_002284_230 Hb_000574_130 Hb_000574_130 Hb_001252_210--Hb_000574_130 Hb_003894_080 Hb_003894_080 Hb_001252_210--Hb_003894_080 Hb_000046_350 Hb_000046_350 Hb_001252_210--Hb_000046_350 Hb_000733_080 Hb_000733_080 Hb_001252_210--Hb_000733_080 Hb_019762_020 Hb_019762_020 Hb_001252_210--Hb_019762_020 Hb_003697_050 Hb_003697_050 Hb_002284_230--Hb_003697_050 Hb_019654_030 Hb_019654_030 Hb_002284_230--Hb_019654_030 Hb_002284_230--Hb_000046_350 Hb_025098_010 Hb_025098_010 Hb_002284_230--Hb_025098_010 Hb_003633_050 Hb_003633_050 Hb_002284_230--Hb_003633_050 Hb_003126_070 Hb_003126_070 Hb_002284_230--Hb_003126_070 Hb_000574_130--Hb_000046_350 Hb_000685_050 Hb_000685_050 Hb_000574_130--Hb_000685_050 Hb_000563_200 Hb_000563_200 Hb_000574_130--Hb_000563_200 Hb_148209_010 Hb_148209_010 Hb_000574_130--Hb_148209_010 Hb_003880_040 Hb_003880_040 Hb_000574_130--Hb_003880_040 Hb_000292_060 Hb_000292_060 Hb_003894_080--Hb_000292_060 Hb_000322_140 Hb_000322_140 Hb_003894_080--Hb_000322_140 Hb_000028_350 Hb_000028_350 Hb_003894_080--Hb_000028_350 Hb_003605_160 Hb_003605_160 Hb_003894_080--Hb_003605_160 Hb_006452_110 Hb_006452_110 Hb_003894_080--Hb_006452_110 Hb_000072_180 Hb_000072_180 Hb_000046_350--Hb_000072_180 Hb_004672_010 Hb_004672_010 Hb_000046_350--Hb_004672_010 Hb_001222_080 Hb_001222_080 Hb_000046_350--Hb_001222_080 Hb_001284_030 Hb_001284_030 Hb_000046_350--Hb_001284_030 Hb_148113_010 Hb_148113_010 Hb_000046_350--Hb_148113_010 Hb_006420_100 Hb_006420_100 Hb_000046_350--Hb_006420_100 Hb_000733_080--Hb_006452_110 Hb_000733_080--Hb_019762_020 Hb_000023_290 Hb_000023_290 Hb_000733_080--Hb_000023_290 Hb_000733_080--Hb_003894_080 Hb_003929_270 Hb_003929_270 Hb_000733_080--Hb_003929_270 Hb_002411_040 Hb_002411_040 Hb_019762_020--Hb_002411_040 Hb_026314_020 Hb_026314_020 Hb_019762_020--Hb_026314_020 Hb_017413_010 Hb_017413_010 Hb_019762_020--Hb_017413_010 Hb_003025_040 Hb_003025_040 Hb_019762_020--Hb_003025_040 Hb_005278_020 Hb_005278_020 Hb_019762_020--Hb_005278_020 Hb_004784_020 Hb_004784_020 Hb_019762_020--Hb_004784_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.8422 15.4721 18.4999 158.93 33.1901 64.5675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
100.57 131.216 100.298 70.2768 52.588

CAGE analysis