Hb_000685_050

Information

Type -
Description -
Location Contig685: 31804-42499
Sequence    

Annotation

kegg
ID pop:POPTR_0001s10600g
description POPTRDRAFT_751211; Inner membrane protein OXA1
nr
ID XP_011026896.1
description PREDICTED: mitochondrial inner membrane protein OXA1-like [Populus euphratica]
swissprot
ID Q42191
description Mitochondrial inner membrane protein OXA1 OS=Arabidopsis thaliana GN=OXA1 PE=2 SV=2
trembl
ID A0A067L9D5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01527 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial inner membrane protein oxa1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54096: 31821-42432
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000685_050 0.0 - - PREDICTED: mitochondrial inner membrane protein OXA1-like [Populus euphratica]
2 Hb_007054_010 0.0898609677 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
3 Hb_000574_130 0.1012631102 - - calcineurin-like protein [Hevea brasiliensis]
4 Hb_130719_010 0.1088733545 - - V-type proton ATPase subunit E [Hevea brasiliensis]
5 Hb_000072_180 0.1159953661 - - PREDICTED: EVI5-like protein [Jatropha curcas]
6 Hb_003291_020 0.1183504209 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
7 Hb_006420_100 0.1184859649 - - PREDICTED: protein bicaudal C homolog 1 [Jatropha curcas]
8 Hb_004672_010 0.1187303492 - - ecotropic viral integration site, putative [Ricinus communis]
9 Hb_001484_010 0.1187424073 - - hypothetical protein POPTR_0005s07440g [Populus trichocarpa]
10 Hb_003880_040 0.1212378997 - - hypothetical protein POPTR_0001s30770g [Populus trichocarpa]
11 Hb_008232_010 0.1236391968 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
12 Hb_000046_350 0.1243963896 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000707_020 0.1252851639 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
14 Hb_000056_250 0.1260898972 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
15 Hb_027751_060 0.1268152063 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Jatropha curcas]
16 Hb_005137_060 0.1302914922 - - -
17 Hb_003098_020 0.1309725587 - - 40S ribosomal protein S5B [Hevea brasiliensis]
18 Hb_001157_080 0.1353101818 - - zinc finger protein, putative [Ricinus communis]
19 Hb_000820_090 0.1380029415 - - -
20 Hb_000896_040 0.1388834393 - - BnaC02g13240D [Brassica napus]

Gene co-expression network

sample Hb_000685_050 Hb_000685_050 Hb_007054_010 Hb_007054_010 Hb_000685_050--Hb_007054_010 Hb_000574_130 Hb_000574_130 Hb_000685_050--Hb_000574_130 Hb_130719_010 Hb_130719_010 Hb_000685_050--Hb_130719_010 Hb_000072_180 Hb_000072_180 Hb_000685_050--Hb_000072_180 Hb_003291_020 Hb_003291_020 Hb_000685_050--Hb_003291_020 Hb_006420_100 Hb_006420_100 Hb_000685_050--Hb_006420_100 Hb_002284_230 Hb_002284_230 Hb_007054_010--Hb_002284_230 Hb_007054_010--Hb_000574_130 Hb_007054_010--Hb_006420_100 Hb_003098_020 Hb_003098_020 Hb_007054_010--Hb_003098_020 Hb_007054_010--Hb_000072_180 Hb_000046_350 Hb_000046_350 Hb_000574_130--Hb_000046_350 Hb_001252_210 Hb_001252_210 Hb_000574_130--Hb_001252_210 Hb_000563_200 Hb_000563_200 Hb_000574_130--Hb_000563_200 Hb_148209_010 Hb_148209_010 Hb_000574_130--Hb_148209_010 Hb_003880_040 Hb_003880_040 Hb_000574_130--Hb_003880_040 Hb_005496_090 Hb_005496_090 Hb_130719_010--Hb_005496_090 Hb_000056_250 Hb_000056_250 Hb_130719_010--Hb_000056_250 Hb_130719_010--Hb_003291_020 Hb_001123_160 Hb_001123_160 Hb_130719_010--Hb_001123_160 Hb_005054_260 Hb_005054_260 Hb_130719_010--Hb_005054_260 Hb_000072_180--Hb_006420_100 Hb_000072_180--Hb_000046_350 Hb_004672_010 Hb_004672_010 Hb_000072_180--Hb_004672_010 Hb_028515_010 Hb_028515_010 Hb_000072_180--Hb_028515_010 Hb_027625_010 Hb_027625_010 Hb_000072_180--Hb_027625_010 Hb_148113_010 Hb_148113_010 Hb_000072_180--Hb_148113_010 Hb_003291_020--Hb_148209_010 Hb_003291_020--Hb_001123_160 Hb_003291_020--Hb_000056_250 Hb_000384_120 Hb_000384_120 Hb_003291_020--Hb_000384_120 Hb_003126_070 Hb_003126_070 Hb_003291_020--Hb_003126_070 Hb_003880_030 Hb_003880_030 Hb_003291_020--Hb_003880_030 Hb_002111_040 Hb_002111_040 Hb_006420_100--Hb_002111_040 Hb_006420_100--Hb_000046_350 Hb_002183_060 Hb_002183_060 Hb_006420_100--Hb_002183_060 Hb_001545_170 Hb_001545_170 Hb_006420_100--Hb_001545_170 Hb_000023_090 Hb_000023_090 Hb_006420_100--Hb_000023_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.18553 3.38008 2.97204 14.8888 2.45134 8.2959
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9402 24.9706 20.4926 21.2137 12.2906

CAGE analysis