Hb_007054_010

Information

Type -
Description -
Location Contig7054: 8404-16873
Sequence    

Annotation

kegg
ID pop:POPTR_0001s35260g
description POPTRDRAFT_706765; hypothetical protein
nr
ID XP_012072367.1
description PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
swissprot
ID Q9VLN1
description WD repeat-containing protein 82 OS=Drosophila melanogaster GN=Wdr82 PE=1 SV=1
trembl
ID A0A067LD66
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10266 PE=4 SV=1
Gene Ontology
ID GO:0080008
description wd repeat-containing protein 82

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55092: 8550-13322 , PASA_asmbl_55093: 8550-13322 , PASA_asmbl_55094: 12167-12501
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007054_010 0.0 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
2 Hb_000685_050 0.0898609677 - - PREDICTED: mitochondrial inner membrane protein OXA1-like [Populus euphratica]
3 Hb_002284_230 0.1229498091 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
4 Hb_000574_130 0.1265266746 - - calcineurin-like protein [Hevea brasiliensis]
5 Hb_006420_100 0.1266138807 - - PREDICTED: protein bicaudal C homolog 1 [Jatropha curcas]
6 Hb_003098_020 0.1293256597 - - 40S ribosomal protein S5B [Hevea brasiliensis]
7 Hb_000072_180 0.1297408348 - - PREDICTED: EVI5-like protein [Jatropha curcas]
8 Hb_019654_030 0.1305506804 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
9 Hb_004672_010 0.1306202035 - - ecotropic viral integration site, putative [Ricinus communis]
10 Hb_142343_010 0.1313383993 - - ATP binding protein, putative [Ricinus communis]
11 Hb_006277_110 0.1315242075 - - protein with unknown function [Ricinus communis]
12 Hb_003697_050 0.132424273 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
13 Hb_003880_040 0.1327189071 - - hypothetical protein POPTR_0001s30770g [Populus trichocarpa]
14 Hb_009193_030 0.1345614782 - - hypothetical protein POPTR_0010s16620g [Populus trichocarpa]
15 Hb_000096_160 0.1354553194 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
16 Hb_000346_040 0.1363570133 - - -
17 Hb_000046_350 0.138792357 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001484_010 0.1388991847 - - hypothetical protein POPTR_0005s07440g [Populus trichocarpa]
19 Hb_003633_050 0.1399163031 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
20 Hb_006698_080 0.142366438 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007054_010 Hb_007054_010 Hb_000685_050 Hb_000685_050 Hb_007054_010--Hb_000685_050 Hb_002284_230 Hb_002284_230 Hb_007054_010--Hb_002284_230 Hb_000574_130 Hb_000574_130 Hb_007054_010--Hb_000574_130 Hb_006420_100 Hb_006420_100 Hb_007054_010--Hb_006420_100 Hb_003098_020 Hb_003098_020 Hb_007054_010--Hb_003098_020 Hb_000072_180 Hb_000072_180 Hb_007054_010--Hb_000072_180 Hb_000685_050--Hb_000574_130 Hb_130719_010 Hb_130719_010 Hb_000685_050--Hb_130719_010 Hb_000685_050--Hb_000072_180 Hb_003291_020 Hb_003291_020 Hb_000685_050--Hb_003291_020 Hb_000685_050--Hb_006420_100 Hb_003697_050 Hb_003697_050 Hb_002284_230--Hb_003697_050 Hb_019654_030 Hb_019654_030 Hb_002284_230--Hb_019654_030 Hb_000046_350 Hb_000046_350 Hb_002284_230--Hb_000046_350 Hb_025098_010 Hb_025098_010 Hb_002284_230--Hb_025098_010 Hb_003633_050 Hb_003633_050 Hb_002284_230--Hb_003633_050 Hb_003126_070 Hb_003126_070 Hb_002284_230--Hb_003126_070 Hb_000574_130--Hb_000046_350 Hb_001252_210 Hb_001252_210 Hb_000574_130--Hb_001252_210 Hb_000563_200 Hb_000563_200 Hb_000574_130--Hb_000563_200 Hb_148209_010 Hb_148209_010 Hb_000574_130--Hb_148209_010 Hb_003880_040 Hb_003880_040 Hb_000574_130--Hb_003880_040 Hb_006420_100--Hb_000072_180 Hb_002111_040 Hb_002111_040 Hb_006420_100--Hb_002111_040 Hb_006420_100--Hb_000046_350 Hb_002183_060 Hb_002183_060 Hb_006420_100--Hb_002183_060 Hb_001545_170 Hb_001545_170 Hb_006420_100--Hb_001545_170 Hb_000023_090 Hb_000023_090 Hb_006420_100--Hb_000023_090 Hb_005305_150 Hb_005305_150 Hb_003098_020--Hb_005305_150 Hb_186982_040 Hb_186982_040 Hb_003098_020--Hb_186982_040 Hb_000136_350 Hb_000136_350 Hb_003098_020--Hb_000136_350 Hb_000210_120 Hb_000210_120 Hb_003098_020--Hb_000210_120 Hb_000896_040 Hb_000896_040 Hb_003098_020--Hb_000896_040 Hb_005914_170 Hb_005914_170 Hb_003098_020--Hb_005914_170 Hb_000072_180--Hb_000046_350 Hb_004672_010 Hb_004672_010 Hb_000072_180--Hb_004672_010 Hb_028515_010 Hb_028515_010 Hb_000072_180--Hb_028515_010 Hb_027625_010 Hb_027625_010 Hb_000072_180--Hb_027625_010 Hb_148113_010 Hb_148113_010 Hb_000072_180--Hb_148113_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.30185 1.02686 1.65833 7.82194 1.50419 6.30384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.89619 9.28786 7.95689 10.0643 4.73769

CAGE analysis