Hb_148209_010

Information

Type -
Description -
Location Contig148209: 13424-17685
Sequence    

Annotation

kegg
ID pop:POPTR_0009s11790g
description POPTRDRAFT_722063; RAS-related GTP-binding family protein
nr
ID XP_002313053.1
description RAS-related GTP-binding family protein [Populus trichocarpa]
swissprot
ID P31022
description Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1
trembl
ID A9PE06
description RAS-related GTP-binding family protein OS=Populus trichocarpa GN=POPTR_0009s11790g PE=2 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein rab7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12146: 13411-17669 , PASA_asmbl_12147: 13422-17052 , PASA_asmbl_12149: 13422-14172 , PASA_asmbl_12150: 16192-17582
cDNA
(Sanger)
(ID:Location)		 012_H18.ab1: 16192-17582

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148209_010 0.0 - - RAS-related GTP-binding family protein [Populus trichocarpa]
2 Hb_003291_020 0.0550034782 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
3 Hb_002303_060 0.0824889687 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001123_160 0.0833286149 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
5 Hb_000922_040 0.0850570062 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
6 Hb_000563_200 0.0858694507 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
7 Hb_000384_120 0.0900299247 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
8 Hb_001410_060 0.0932800421 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
9 Hb_005269_080 0.0942325262 - - protein with unknown function [Ricinus communis]
10 Hb_001053_140 0.0946806807 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
11 Hb_003126_070 0.0949354447 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
12 Hb_000417_260 0.0969826744 - - protein with unknown function [Ricinus communis]
13 Hb_004672_010 0.0976989293 - - ecotropic viral integration site, putative [Ricinus communis]
14 Hb_008232_010 0.0995681712 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
15 Hb_000300_430 0.0999037256 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
16 Hb_002324_010 0.1003230422 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
17 Hb_011485_020 0.1005280545 - - protein with unknown function [Ricinus communis]
18 Hb_001222_080 0.1009500606 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
19 Hb_000638_170 0.1016627892 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
20 Hb_001284_030 0.1020681846 - - Coiled-coil domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_148209_010 Hb_148209_010 Hb_003291_020 Hb_003291_020 Hb_148209_010--Hb_003291_020 Hb_002303_060 Hb_002303_060 Hb_148209_010--Hb_002303_060 Hb_001123_160 Hb_001123_160 Hb_148209_010--Hb_001123_160 Hb_000922_040 Hb_000922_040 Hb_148209_010--Hb_000922_040 Hb_000563_200 Hb_000563_200 Hb_148209_010--Hb_000563_200 Hb_000384_120 Hb_000384_120 Hb_148209_010--Hb_000384_120 Hb_003291_020--Hb_001123_160 Hb_000056_250 Hb_000056_250 Hb_003291_020--Hb_000056_250 Hb_003291_020--Hb_000384_120 Hb_003126_070 Hb_003126_070 Hb_003291_020--Hb_003126_070 Hb_003880_030 Hb_003880_030 Hb_003291_020--Hb_003880_030 Hb_005269_080 Hb_005269_080 Hb_002303_060--Hb_005269_080 Hb_001053_140 Hb_001053_140 Hb_002303_060--Hb_001053_140 Hb_000189_240 Hb_000189_240 Hb_002303_060--Hb_000189_240 Hb_002314_010 Hb_002314_010 Hb_002303_060--Hb_002314_010 Hb_003605_160 Hb_003605_160 Hb_002303_060--Hb_003605_160 Hb_000107_300 Hb_000107_300 Hb_002303_060--Hb_000107_300 Hb_008232_010 Hb_008232_010 Hb_001123_160--Hb_008232_010 Hb_003622_040 Hb_003622_040 Hb_001123_160--Hb_003622_040 Hb_001123_160--Hb_000563_200 Hb_000300_430 Hb_000300_430 Hb_001123_160--Hb_000300_430 Hb_000922_040--Hb_005269_080 Hb_000922_040--Hb_000384_120 Hb_001222_080 Hb_001222_080 Hb_000922_040--Hb_001222_080 Hb_002016_080 Hb_002016_080 Hb_000922_040--Hb_002016_080 Hb_000701_100 Hb_000701_100 Hb_000922_040--Hb_000701_100 Hb_001410_060 Hb_001410_060 Hb_000922_040--Hb_001410_060 Hb_000563_200--Hb_001410_060 Hb_145880_020 Hb_145880_020 Hb_000563_200--Hb_145880_020 Hb_001353_010 Hb_001353_010 Hb_000563_200--Hb_001353_010 Hb_003880_040 Hb_003880_040 Hb_000563_200--Hb_003880_040 Hb_072922_020 Hb_072922_020 Hb_000384_120--Hb_072922_020 Hb_000417_260 Hb_000417_260 Hb_000384_120--Hb_000417_260 Hb_000384_120--Hb_003880_030 Hb_000384_120--Hb_005269_080 Hb_002324_010 Hb_002324_010 Hb_000384_120--Hb_002324_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.7052 26.8529 35.4684 119.186 18.5351 30.9375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
105.28 142.679 105.018 59.5822 54.5185

CAGE analysis