Hb_145880_020

Information

Type -
Description -
Location Contig145880: 24795-25547
Sequence    

Annotation

kegg
ID tcc:TCM_005989
description 20S proteasome alpha subunit C1 isoform 1
nr
ID XP_012090623.1
description PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
swissprot
ID P52427
description Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1
trembl
ID A0A067JFE3
description Proteasome subunit alpha type OS=Jatropha curcas GN=JCGZ_26393 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit alpha type-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11844: 23189-25886
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_145880_020 0.0 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
2 Hb_000563_200 0.0819178941 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
3 Hb_001410_060 0.0947229847 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
4 Hb_148209_010 0.103810254 - - RAS-related GTP-binding family protein [Populus trichocarpa]
5 Hb_000110_120 0.1128418887 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
6 Hb_002303_060 0.1139668086 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004627_030 0.1148934048 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
8 Hb_002154_110 0.1171245362 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
9 Hb_000009_290 0.1192625874 - - PREDICTED: cold-regulated 413 plasma membrane protein 4-like [Jatropha curcas]
10 Hb_000292_060 0.1194274523 - - transporter, putative [Ricinus communis]
11 Hb_001123_160 0.119527975 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_002631_260 0.1196066678 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
13 Hb_001208_030 0.1213393548 - - conserved hypothetical protein [Ricinus communis]
14 Hb_076219_010 0.1213967114 - - PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha curcas]
15 Hb_001754_080 0.1223945948 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
16 Hb_002301_160 0.1227350555 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
17 Hb_003894_080 0.1233187872 - - PREDICTED: protein cornichon homolog 4 [Vitis vinifera]
18 Hb_001489_110 0.1243604968 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
19 Hb_002324_010 0.1257465582 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
20 Hb_000574_130 0.1258384551 - - calcineurin-like protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_145880_020 Hb_145880_020 Hb_000563_200 Hb_000563_200 Hb_145880_020--Hb_000563_200 Hb_001410_060 Hb_001410_060 Hb_145880_020--Hb_001410_060 Hb_148209_010 Hb_148209_010 Hb_145880_020--Hb_148209_010 Hb_000110_120 Hb_000110_120 Hb_145880_020--Hb_000110_120 Hb_002303_060 Hb_002303_060 Hb_145880_020--Hb_002303_060 Hb_004627_030 Hb_004627_030 Hb_145880_020--Hb_004627_030 Hb_000563_200--Hb_001410_060 Hb_001353_010 Hb_001353_010 Hb_000563_200--Hb_001353_010 Hb_000563_200--Hb_148209_010 Hb_001123_160 Hb_001123_160 Hb_000563_200--Hb_001123_160 Hb_003880_040 Hb_003880_040 Hb_000563_200--Hb_003880_040 Hb_000377_120 Hb_000377_120 Hb_001410_060--Hb_000377_120 Hb_000922_040 Hb_000922_040 Hb_001410_060--Hb_000922_040 Hb_001410_060--Hb_003880_040 Hb_005306_070 Hb_005306_070 Hb_001410_060--Hb_005306_070 Hb_005269_080 Hb_005269_080 Hb_001410_060--Hb_005269_080 Hb_003291_020 Hb_003291_020 Hb_148209_010--Hb_003291_020 Hb_148209_010--Hb_002303_060 Hb_148209_010--Hb_001123_160 Hb_148209_010--Hb_000922_040 Hb_000384_120 Hb_000384_120 Hb_148209_010--Hb_000384_120 Hb_002301_160 Hb_002301_160 Hb_000110_120--Hb_002301_160 Hb_005460_060 Hb_005460_060 Hb_000110_120--Hb_005460_060 Hb_012305_130 Hb_012305_130 Hb_000110_120--Hb_012305_130 Hb_000009_290 Hb_000009_290 Hb_000110_120--Hb_000009_290 Hb_000110_120--Hb_004627_030 Hb_000077_180 Hb_000077_180 Hb_000110_120--Hb_000077_180 Hb_002303_060--Hb_005269_080 Hb_001053_140 Hb_001053_140 Hb_002303_060--Hb_001053_140 Hb_000189_240 Hb_000189_240 Hb_002303_060--Hb_000189_240 Hb_002314_010 Hb_002314_010 Hb_002303_060--Hb_002314_010 Hb_003605_160 Hb_003605_160 Hb_002303_060--Hb_003605_160 Hb_000107_300 Hb_000107_300 Hb_002303_060--Hb_000107_300 Hb_004800_100 Hb_004800_100 Hb_004627_030--Hb_004800_100 Hb_004627_030--Hb_002301_160 Hb_021409_080 Hb_021409_080 Hb_004627_030--Hb_021409_080 Hb_002045_070 Hb_002045_070 Hb_004627_030--Hb_002045_070 Hb_000300_430 Hb_000300_430 Hb_004627_030--Hb_000300_430 Hb_004627_030--Hb_012305_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.8045 16.4976 35.5823 144.718 17.007 30.4529
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.431 122.803 86.4129 49.5589 38.7974

CAGE analysis