Hb_012305_130

Information

Type -
Description -
Location Contig12305: 82009-84361
Sequence    

Annotation

kegg
ID cit:102625214
description GTP-binding protein SAR1A-like
nr
ID XP_012084040.1
description PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
swissprot
ID O04834
description GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1
trembl
ID A0A067JVH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18972 PE=3 SV=1
Gene Ontology
ID GO:0005783
description gtp-binding protein sar1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07019: 82039-84354
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012305_130 0.0 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
2 Hb_021409_080 0.0646899105 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
3 Hb_000110_120 0.0835674353 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
4 Hb_000964_030 0.0911908493 - - ADP/ATP carrier 2 [Theobroma cacao]
5 Hb_028049_010 0.0919426333 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
6 Hb_002110_100 0.0932940556 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
7 Hb_004627_030 0.09444785 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
8 Hb_002301_160 0.0953255347 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
9 Hb_000402_130 0.1033577596 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
10 Hb_005653_070 0.1065853813 - - K+ transport growth defect-like protein [Hevea brasiliensis]
11 Hb_004007_110 0.1077227445 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
12 Hb_004800_100 0.1088696014 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000407_070 0.1125653436 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
14 Hb_000110_050 0.1134615019 - - -
15 Hb_003376_180 0.113655569 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
16 Hb_002045_070 0.1139381355 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
17 Hb_000252_100 0.1170880571 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
18 Hb_180343_010 0.1171480226 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
19 Hb_000060_050 0.1174426356 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
20 Hb_004158_020 0.1177569976 - - Rab1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_012305_130 Hb_012305_130 Hb_021409_080 Hb_021409_080 Hb_012305_130--Hb_021409_080 Hb_000110_120 Hb_000110_120 Hb_012305_130--Hb_000110_120 Hb_000964_030 Hb_000964_030 Hb_012305_130--Hb_000964_030 Hb_028049_010 Hb_028049_010 Hb_012305_130--Hb_028049_010 Hb_002110_100 Hb_002110_100 Hb_012305_130--Hb_002110_100 Hb_004627_030 Hb_004627_030 Hb_012305_130--Hb_004627_030 Hb_111985_110 Hb_111985_110 Hb_021409_080--Hb_111985_110 Hb_021409_080--Hb_004627_030 Hb_180343_010 Hb_180343_010 Hb_021409_080--Hb_180343_010 Hb_021409_080--Hb_002110_100 Hb_021409_080--Hb_000110_120 Hb_002301_160 Hb_002301_160 Hb_000110_120--Hb_002301_160 Hb_005460_060 Hb_005460_060 Hb_000110_120--Hb_005460_060 Hb_000009_290 Hb_000009_290 Hb_000110_120--Hb_000009_290 Hb_000110_120--Hb_004627_030 Hb_000077_180 Hb_000077_180 Hb_000110_120--Hb_000077_180 Hb_005653_070 Hb_005653_070 Hb_000964_030--Hb_005653_070 Hb_038574_010 Hb_038574_010 Hb_000964_030--Hb_038574_010 Hb_002119_130 Hb_002119_130 Hb_000964_030--Hb_002119_130 Hb_000252_100 Hb_000252_100 Hb_000964_030--Hb_000252_100 Hb_007218_120 Hb_007218_120 Hb_000964_030--Hb_007218_120 Hb_053709_050 Hb_053709_050 Hb_000964_030--Hb_053709_050 Hb_028049_010--Hb_000110_120 Hb_004007_110 Hb_004007_110 Hb_028049_010--Hb_004007_110 Hb_028049_010--Hb_021409_080 Hb_000771_060 Hb_000771_060 Hb_028049_010--Hb_000771_060 Hb_000428_060 Hb_000428_060 Hb_028049_010--Hb_000428_060 Hb_032920_070 Hb_032920_070 Hb_002110_100--Hb_032920_070 Hb_003305_040 Hb_003305_040 Hb_002110_100--Hb_003305_040 Hb_002392_010 Hb_002392_010 Hb_002110_100--Hb_002392_010 Hb_004158_020 Hb_004158_020 Hb_002110_100--Hb_004158_020 Hb_002110_100--Hb_005653_070 Hb_005701_120 Hb_005701_120 Hb_002110_100--Hb_005701_120 Hb_004800_100 Hb_004800_100 Hb_004627_030--Hb_004800_100 Hb_004627_030--Hb_002301_160 Hb_002045_070 Hb_002045_070 Hb_004627_030--Hb_002045_070 Hb_000300_430 Hb_000300_430 Hb_004627_030--Hb_000300_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.55232 9.95372 15.956 37.147 3.13468 4.23394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.0987 18.8273 17.4633 14.8985 12.9694

CAGE analysis