Hb_028049_010

Information

Type transcription factor
Description TF Family: mTERF
Location Contig28049: 82-942
Sequence    

Annotation

kegg
ID rcu:RCOM_0454380
description hypothetical protein
nr
ID XP_002529476.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SU07
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0454380 PE=4 SV=1
Gene Ontology
ID GO:0005739
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028049_010 0.0 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
2 Hb_012305_130 0.0919426333 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
3 Hb_000110_120 0.1038496645 - - PREDICTED: ras-related protein RABE1a [Fragaria vesca subsp. vesca]
4 Hb_004007_110 0.1076917042 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
5 Hb_021409_080 0.1132193341 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
6 Hb_000771_060 0.1156775531 - - PREDICTED: spermine synthase [Jatropha curcas]
7 Hb_000428_060 0.116466483 - - malate dehydrogenase, putative [Ricinus communis]
8 Hb_027073_010 0.121913 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
9 Hb_007441_240 0.1239335025 - - ethphon-induced protein [Hevea brasiliensis]
10 Hb_002217_100 0.1246382916 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
11 Hb_002539_100 0.1332326536 - - PREDICTED: 14-3-3-like protein GF14 iota [Jatropha curcas]
12 Hb_180343_010 0.1361828858 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
13 Hb_004800_100 0.1380129653 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002110_100 0.1394330506 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
15 Hb_002301_160 0.1401395322 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
16 Hb_000110_050 0.1403239499 - - -
17 Hb_004158_020 0.1404123902 - - Rab1 [Hevea brasiliensis]
18 Hb_004627_030 0.1411678277 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
19 Hb_001153_120 0.1423869599 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
20 Hb_000964_030 0.1425570161 - - ADP/ATP carrier 2 [Theobroma cacao]

Gene co-expression network

sample Hb_028049_010 Hb_028049_010 Hb_012305_130 Hb_012305_130 Hb_028049_010--Hb_012305_130 Hb_000110_120 Hb_000110_120 Hb_028049_010--Hb_000110_120 Hb_004007_110 Hb_004007_110 Hb_028049_010--Hb_004007_110 Hb_021409_080 Hb_021409_080 Hb_028049_010--Hb_021409_080 Hb_000771_060 Hb_000771_060 Hb_028049_010--Hb_000771_060 Hb_000428_060 Hb_000428_060 Hb_028049_010--Hb_000428_060 Hb_012305_130--Hb_021409_080 Hb_012305_130--Hb_000110_120 Hb_000964_030 Hb_000964_030 Hb_012305_130--Hb_000964_030 Hb_002110_100 Hb_002110_100 Hb_012305_130--Hb_002110_100 Hb_004627_030 Hb_004627_030 Hb_012305_130--Hb_004627_030 Hb_002301_160 Hb_002301_160 Hb_000110_120--Hb_002301_160 Hb_005460_060 Hb_005460_060 Hb_000110_120--Hb_005460_060 Hb_000009_290 Hb_000009_290 Hb_000110_120--Hb_000009_290 Hb_000110_120--Hb_004627_030 Hb_000077_180 Hb_000077_180 Hb_000110_120--Hb_000077_180 Hb_000012_110 Hb_000012_110 Hb_004007_110--Hb_000012_110 Hb_007590_090 Hb_007590_090 Hb_004007_110--Hb_007590_090 Hb_004007_110--Hb_002110_100 Hb_004158_020 Hb_004158_020 Hb_004007_110--Hb_004158_020 Hb_004007_110--Hb_012305_130 Hb_111985_110 Hb_111985_110 Hb_021409_080--Hb_111985_110 Hb_021409_080--Hb_004627_030 Hb_180343_010 Hb_180343_010 Hb_021409_080--Hb_180343_010 Hb_021409_080--Hb_002110_100 Hb_021409_080--Hb_000110_120 Hb_000815_290 Hb_000815_290 Hb_000771_060--Hb_000815_290 Hb_000771_060--Hb_000428_060 Hb_000008_400 Hb_000008_400 Hb_000771_060--Hb_000008_400 Hb_000739_140 Hb_000739_140 Hb_000771_060--Hb_000739_140 Hb_001016_100 Hb_001016_100 Hb_000771_060--Hb_001016_100 Hb_003106_100 Hb_003106_100 Hb_000428_060--Hb_003106_100 Hb_001123_160 Hb_001123_160 Hb_000428_060--Hb_001123_160 Hb_005276_040 Hb_005276_040 Hb_000428_060--Hb_005276_040 Hb_002876_020 Hb_002876_020 Hb_000428_060--Hb_002876_020 Hb_000428_060--Hb_180343_010 Hb_002045_060 Hb_002045_060 Hb_000428_060--Hb_002045_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.675744 0.6702 1.69498 3.89529 0.068294 0.387842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.51346 2.57776 2.11611 1.72328 1.43297

CAGE analysis