Hb_000056_250

Information

Type -
Description -
Location Contig56: 391756-397894
Sequence    

Annotation

kegg
ID cic:CICLE_v10032480mg
description hypothetical protein
nr
ID XP_012067624.1
description PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
swissprot
ID Q9CYW4
description Haloacid dehalogenase-like hydrolase domain-containing protein 3 OS=Mus musculus GN=Hdhd3 PE=1 SV=1
trembl
ID A0A067LAR8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15591 PE=4 SV=1
Gene Ontology
ID GO:0016787
description haloacid dehalogenase-like hydrolase domain-containing protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48721: 391828-397875 , PASA_asmbl_48722: 392068-392397
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000056_250 0.0 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
2 Hb_000096_150 0.0739935779 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
3 Hb_003291_020 0.0888261992 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
4 Hb_005278_040 0.0899273247 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
5 Hb_027751_060 0.0907172472 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Jatropha curcas]
6 Hb_000417_260 0.0927043757 - - protein with unknown function [Ricinus communis]
7 Hb_130719_010 0.0943234505 - - V-type proton ATPase subunit E [Hevea brasiliensis]
8 Hb_000436_030 0.101571408 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005496_090 0.1016466683 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
10 Hb_000384_120 0.1039168406 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
11 Hb_005054_260 0.1135723745 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
12 Hb_000673_020 0.1137735627 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
13 Hb_000320_330 0.1149354964 - - uncharacterized protein LOC100527884 [Glycine max]
14 Hb_000056_070 0.1154350175 - - -
15 Hb_000928_130 0.1160741776 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_023344_050 0.1167644257 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
17 Hb_148209_010 0.1174298815 - - RAS-related GTP-binding family protein [Populus trichocarpa]
18 Hb_003880_030 0.1184809558 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
19 Hb_138585_040 0.1193132621 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
20 Hb_000292_060 0.1203727563 - - transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000056_250 Hb_000056_250 Hb_000096_150 Hb_000096_150 Hb_000056_250--Hb_000096_150 Hb_003291_020 Hb_003291_020 Hb_000056_250--Hb_003291_020 Hb_005278_040 Hb_005278_040 Hb_000056_250--Hb_005278_040 Hb_027751_060 Hb_027751_060 Hb_000056_250--Hb_027751_060 Hb_000417_260 Hb_000417_260 Hb_000056_250--Hb_000417_260 Hb_130719_010 Hb_130719_010 Hb_000056_250--Hb_130719_010 Hb_000125_210 Hb_000125_210 Hb_000096_150--Hb_000125_210 Hb_000928_130 Hb_000928_130 Hb_000096_150--Hb_000928_130 Hb_000318_160 Hb_000318_160 Hb_000096_150--Hb_000318_160 Hb_000673_020 Hb_000673_020 Hb_000096_150--Hb_000673_020 Hb_002026_120 Hb_002026_120 Hb_000096_150--Hb_002026_120 Hb_148209_010 Hb_148209_010 Hb_003291_020--Hb_148209_010 Hb_001123_160 Hb_001123_160 Hb_003291_020--Hb_001123_160 Hb_000384_120 Hb_000384_120 Hb_003291_020--Hb_000384_120 Hb_003126_070 Hb_003126_070 Hb_003291_020--Hb_003126_070 Hb_003880_030 Hb_003880_030 Hb_003291_020--Hb_003880_030 Hb_005278_040--Hb_000417_260 Hb_001008_090 Hb_001008_090 Hb_005278_040--Hb_001008_090 Hb_002324_010 Hb_002324_010 Hb_005278_040--Hb_002324_010 Hb_005278_040--Hb_000384_120 Hb_138585_040 Hb_138585_040 Hb_005278_040--Hb_138585_040 Hb_027751_060--Hb_000096_150 Hb_000046_350 Hb_000046_350 Hb_027751_060--Hb_000046_350 Hb_005167_030 Hb_005167_030 Hb_027751_060--Hb_005167_030 Hb_027751_060--Hb_000417_260 Hb_001284_030 Hb_001284_030 Hb_027751_060--Hb_001284_030 Hb_001005_080 Hb_001005_080 Hb_000417_260--Hb_001005_080 Hb_000417_260--Hb_000384_120 Hb_004672_010 Hb_004672_010 Hb_000417_260--Hb_004672_010 Hb_000417_260--Hb_001008_090 Hb_001481_140 Hb_001481_140 Hb_000417_260--Hb_001481_140 Hb_005496_090 Hb_005496_090 Hb_130719_010--Hb_005496_090 Hb_130719_010--Hb_003291_020 Hb_130719_010--Hb_001123_160 Hb_000685_050 Hb_000685_050 Hb_130719_010--Hb_000685_050 Hb_005054_260 Hb_005054_260 Hb_130719_010--Hb_005054_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.25847 1.2416 5.31347 11.7971 1.85305 4.42915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2471 22.5584 18.4135 9.89554 9.93561

CAGE analysis