Hb_002026_120

Information

Type -
Description -
Location Contig2026: 99400-104277
Sequence    

Annotation

kegg
ID cit:102623550
description hypothetical protein
nr
ID KDO76275.1
description hypothetical protein CISIN_1g025276mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067GCB2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025276mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20637: 99558-104279 , PASA_asmbl_20638: 99597-104279 , PASA_asmbl_20639: 100254-103671 , PASA_asmbl_20640: 101940-102207
cDNA
(Sanger)
(ID:Location)		 005_M08.ab1: 99699-104248 , 009_I18.ab1: 99720-104248 , 034_G05.ab1: 99746-104248

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002026_120 0.0 - - hypothetical protein CISIN_1g025276mg [Citrus sinensis]
2 Hb_000928_130 0.0634219105 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
3 Hb_000096_150 0.0949064154 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
4 Hb_023344_050 0.0980517582 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
5 Hb_000530_070 0.0991269304 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
6 Hb_000318_160 0.1101761961 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
7 Hb_001314_040 0.1111760665 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
8 Hb_013405_140 0.1113998309 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
9 Hb_007037_020 0.1147711149 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
10 Hb_001240_020 0.1153454612 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
11 Hb_000069_700 0.1153734475 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
12 Hb_147752_010 0.1181955964 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
13 Hb_001172_120 0.1188941363 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
14 Hb_000320_330 0.1236015238 - - uncharacterized protein LOC100527884 [Glycine max]
15 Hb_000111_450 0.1239813325 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
16 Hb_000224_140 0.1242888122 - - ribonuclease z, chloroplast, putative [Ricinus communis]
17 Hb_011021_040 0.1247169994 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
18 Hb_000436_030 0.1255508831 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007441_260 0.1270494463 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
20 Hb_011485_020 0.1275042635 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_002026_120 Hb_002026_120 Hb_000928_130 Hb_000928_130 Hb_002026_120--Hb_000928_130 Hb_000096_150 Hb_000096_150 Hb_002026_120--Hb_000096_150 Hb_023344_050 Hb_023344_050 Hb_002026_120--Hb_023344_050 Hb_000530_070 Hb_000530_070 Hb_002026_120--Hb_000530_070 Hb_000318_160 Hb_000318_160 Hb_002026_120--Hb_000318_160 Hb_001314_040 Hb_001314_040 Hb_002026_120--Hb_001314_040 Hb_000928_130--Hb_000096_150 Hb_000928_130--Hb_000318_160 Hb_000445_490 Hb_000445_490 Hb_000928_130--Hb_000445_490 Hb_000928_130--Hb_023344_050 Hb_001240_020 Hb_001240_020 Hb_000928_130--Hb_001240_020 Hb_000056_250 Hb_000056_250 Hb_000096_150--Hb_000056_250 Hb_000125_210 Hb_000125_210 Hb_000096_150--Hb_000125_210 Hb_000096_150--Hb_000318_160 Hb_000673_020 Hb_000673_020 Hb_000096_150--Hb_000673_020 Hb_025645_030 Hb_025645_030 Hb_023344_050--Hb_025645_030 Hb_005278_040 Hb_005278_040 Hb_023344_050--Hb_005278_040 Hb_023344_050--Hb_001240_020 Hb_023344_050--Hb_000056_250 Hb_000530_070--Hb_001314_040 Hb_001157_010 Hb_001157_010 Hb_000530_070--Hb_001157_010 Hb_003581_220 Hb_003581_220 Hb_000530_070--Hb_003581_220 Hb_000802_100 Hb_000802_100 Hb_000530_070--Hb_000802_100 Hb_001076_020 Hb_001076_020 Hb_000530_070--Hb_001076_020 Hb_003349_080 Hb_003349_080 Hb_000318_160--Hb_003349_080 Hb_003050_280 Hb_003050_280 Hb_000318_160--Hb_003050_280 Hb_000224_140 Hb_000224_140 Hb_000318_160--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_000318_160--Hb_068056_030 Hb_000318_160--Hb_000445_490 Hb_006569_100 Hb_006569_100 Hb_001314_040--Hb_006569_100 Hb_001314_040--Hb_001157_010 Hb_020419_020 Hb_020419_020 Hb_001314_040--Hb_020419_020 Hb_001314_040--Hb_000802_100 Hb_001314_040--Hb_000224_140 Hb_001314_040--Hb_068056_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.42532 2.03249 7.78017 6.03875 1.4399 2.60916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.2121 26.1986 21.1737 6.12648 8.51213

CAGE analysis