Hb_001240_020

Information

Type -
Description -
Location Contig1240: 26980-40828
Sequence    

Annotation

kegg
ID rcu:RCOM_0868280
description hypothetical protein
nr
ID XP_012081046.1
description PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K5R0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17087 PE=4 SV=1
Gene Ontology
ID GO:0005622
description dna-methyltransferase cmt2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07298: 27021-40848
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001240_020 0.0 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
2 Hb_147752_010 0.0929636958 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
3 Hb_000302_290 0.0942615624 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
4 Hb_000061_130 0.0968187519 - - rotamase, putative [Ricinus communis]
5 Hb_000445_490 0.098619882 - - -
6 Hb_000928_130 0.1001355698 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_001085_270 0.1064342072 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
8 Hb_001076_020 0.1104195892 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
9 Hb_023344_050 0.111388417 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
10 Hb_005000_180 0.111591972 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
11 Hb_000707_020 0.1135983339 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
12 Hb_062135_020 0.1142632544 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
13 Hb_002026_120 0.1153454612 - - hypothetical protein CISIN_1g025276mg [Citrus sinensis]
14 Hb_007441_260 0.1158791223 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
15 Hb_003020_330 0.1173470577 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
16 Hb_000384_120 0.1182777433 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
17 Hb_000224_140 0.1185767135 - - ribonuclease z, chloroplast, putative [Ricinus communis]
18 Hb_001979_020 0.1190045065 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
19 Hb_002518_290 0.1201203793 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
20 Hb_011377_020 0.120832557 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]

Gene co-expression network

sample Hb_001240_020 Hb_001240_020 Hb_147752_010 Hb_147752_010 Hb_001240_020--Hb_147752_010 Hb_000302_290 Hb_000302_290 Hb_001240_020--Hb_000302_290 Hb_000061_130 Hb_000061_130 Hb_001240_020--Hb_000061_130 Hb_000445_490 Hb_000445_490 Hb_001240_020--Hb_000445_490 Hb_000928_130 Hb_000928_130 Hb_001240_020--Hb_000928_130 Hb_001085_270 Hb_001085_270 Hb_001240_020--Hb_001085_270 Hb_000111_100 Hb_000111_100 Hb_147752_010--Hb_000111_100 Hb_147752_010--Hb_000928_130 Hb_000110_170 Hb_000110_170 Hb_147752_010--Hb_000110_170 Hb_007441_260 Hb_007441_260 Hb_147752_010--Hb_007441_260 Hb_147752_010--Hb_000445_490 Hb_005000_180 Hb_005000_180 Hb_000302_290--Hb_005000_180 Hb_062135_020 Hb_062135_020 Hb_000302_290--Hb_062135_020 Hb_000302_290--Hb_000061_130 Hb_000302_290--Hb_147752_010 Hb_002518_290 Hb_002518_290 Hb_000302_290--Hb_002518_290 Hb_027380_180 Hb_027380_180 Hb_000061_130--Hb_027380_180 Hb_000061_130--Hb_001085_270 Hb_000193_120 Hb_000193_120 Hb_000061_130--Hb_000193_120 Hb_000567_410 Hb_000567_410 Hb_000061_130--Hb_000567_410 Hb_002909_130 Hb_002909_130 Hb_000061_130--Hb_002909_130 Hb_002391_220 Hb_002391_220 Hb_000445_490--Hb_002391_220 Hb_000318_160 Hb_000318_160 Hb_000445_490--Hb_000318_160 Hb_000445_490--Hb_000928_130 Hb_000975_230 Hb_000975_230 Hb_000445_490--Hb_000975_230 Hb_000224_140 Hb_000224_140 Hb_000445_490--Hb_000224_140 Hb_002026_120 Hb_002026_120 Hb_000928_130--Hb_002026_120 Hb_000096_150 Hb_000096_150 Hb_000928_130--Hb_000096_150 Hb_000928_130--Hb_000318_160 Hb_023344_050 Hb_023344_050 Hb_000928_130--Hb_023344_050 Hb_001369_170 Hb_001369_170 Hb_001085_270--Hb_001369_170 Hb_001085_270--Hb_000567_410 Hb_001085_270--Hb_002909_130 Hb_172221_010 Hb_172221_010 Hb_001085_270--Hb_172221_010 Hb_001085_270--Hb_000193_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.35109 3.795 11.1236 13.2165 4.69991 8.17629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.5555 74.7506 35.4859 24.2189 19.3582

CAGE analysis