Hb_000975_230

Information

Type -
Description -
Location Contig975: 202909-203181
Sequence    

Annotation

kegg
ID dsi:Dsim_GD10137
description GD10137 gene product from transcript GD10137-RA
nr
ID AFW56557.1
description hypothetical protein ZEAMMB73_864543 [Zea mays]
swissprot
ID -
description -
trembl
ID M0VDG3
description Histone H2A OS=Hordeum vulgare var. distichum PE=3 SV=1
Gene Ontology
ID GO:0000775
description histone h2a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64013: 202484-204076 , PASA_asmbl_64014: 203140-203369
cDNA
(Sanger)
(ID:Location)		 004_L11.ab1: 202849-204033 , 008_F18.ab1: 202804-204035 , 010_E23.ab1: 202804-203959 , 011_D11.ab1: 202683-204023 , 019_M24.ab1: 202810-204075 , 022_I21.ab1: 202849-204024 , 045_B09.ab1: 202806-204070

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000975_230 0.0 - - hypothetical protein ZEAMMB73_864543 [Zea mays]
2 Hb_000445_490 0.098639649 - - -
3 Hb_003777_040 0.1030805518 - - PREDICTED: sm-like protein LSM3A [Jatropha curcas]
4 Hb_000049_050 0.1068250557 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
5 Hb_000030_200 0.1213770186 - - PREDICTED: early nodulin-93-like [Populus euphratica]
6 Hb_000260_790 0.1223214536 - - NADH dehydrogenase 1 alpha subcomplex subunit 12 isoform 1 [Theobroma cacao]
7 Hb_000834_030 0.1289113458 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
8 Hb_000042_200 0.1296646227 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
9 Hb_001172_100 0.1298373083 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
10 Hb_000463_130 0.1307636604 - - unnamed protein product [Coffea canephora]
11 Hb_002324_010 0.1307945865 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
12 Hb_005045_070 0.1326256982 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
13 Hb_000384_120 0.1331260732 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
14 Hb_000056_250 0.1333835646 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
15 Hb_010402_050 0.1338336333 - - -
16 Hb_077399_010 0.1348862177 - - hypothetical protein POPTR_0003s09910g [Populus trichocarpa]
17 Hb_001136_060 0.1351634399 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
18 Hb_023344_050 0.1360376588 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
19 Hb_000056_070 0.1363412345 - - -
20 Hb_000320_330 0.1372990806 - - uncharacterized protein LOC100527884 [Glycine max]

Gene co-expression network

sample Hb_000975_230 Hb_000975_230 Hb_000445_490 Hb_000445_490 Hb_000975_230--Hb_000445_490 Hb_003777_040 Hb_003777_040 Hb_000975_230--Hb_003777_040 Hb_000049_050 Hb_000049_050 Hb_000975_230--Hb_000049_050 Hb_000030_200 Hb_000030_200 Hb_000975_230--Hb_000030_200 Hb_000260_790 Hb_000260_790 Hb_000975_230--Hb_000260_790 Hb_000834_030 Hb_000834_030 Hb_000975_230--Hb_000834_030 Hb_002391_220 Hb_002391_220 Hb_000445_490--Hb_002391_220 Hb_000318_160 Hb_000318_160 Hb_000445_490--Hb_000318_160 Hb_000928_130 Hb_000928_130 Hb_000445_490--Hb_000928_130 Hb_001240_020 Hb_001240_020 Hb_000445_490--Hb_001240_020 Hb_000224_140 Hb_000224_140 Hb_000445_490--Hb_000224_140 Hb_003777_040--Hb_000445_490 Hb_011377_020 Hb_011377_020 Hb_003777_040--Hb_011377_020 Hb_103118_020 Hb_103118_020 Hb_003777_040--Hb_103118_020 Hb_002809_150 Hb_002809_150 Hb_003777_040--Hb_002809_150 Hb_001307_210 Hb_001307_210 Hb_003777_040--Hb_001307_210 Hb_138585_040 Hb_138585_040 Hb_000049_050--Hb_138585_040 Hb_002631_260 Hb_002631_260 Hb_000049_050--Hb_002631_260 Hb_000049_050--Hb_000260_790 Hb_000707_020 Hb_000707_020 Hb_000049_050--Hb_000707_020 Hb_001172_100 Hb_001172_100 Hb_000049_050--Hb_001172_100 Hb_005045_070 Hb_005045_070 Hb_000049_050--Hb_005045_070 Hb_000087_130 Hb_000087_130 Hb_000030_200--Hb_000087_130 Hb_072922_020 Hb_072922_020 Hb_000030_200--Hb_072922_020 Hb_000948_220 Hb_000948_220 Hb_000030_200--Hb_000948_220 Hb_000384_120 Hb_000384_120 Hb_000030_200--Hb_000384_120 Hb_001155_040 Hb_001155_040 Hb_000030_200--Hb_001155_040 Hb_010560_030 Hb_010560_030 Hb_000030_200--Hb_010560_030 Hb_077399_010 Hb_077399_010 Hb_000260_790--Hb_077399_010 Hb_000260_790--Hb_002631_260 Hb_001195_490 Hb_001195_490 Hb_000260_790--Hb_001195_490 Hb_000260_790--Hb_138585_040 Hb_012490_050 Hb_012490_050 Hb_000834_030--Hb_012490_050 Hb_000834_030--Hb_000707_020 Hb_005463_140 Hb_005463_140 Hb_000834_030--Hb_005463_140 Hb_003777_210 Hb_003777_210 Hb_000834_030--Hb_003777_210 Hb_001284_030 Hb_001284_030 Hb_000834_030--Hb_001284_030 Hb_000042_200 Hb_000042_200 Hb_000834_030--Hb_000042_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.5055 9.98796 46.196 171.462 19.1919 54.4397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
248.351 379.476 157.32 68.5308 125.528

CAGE analysis