Hb_103118_020

Information

Type -
Description -
Location Contig103118: 6526-8638
Sequence    

Annotation

kegg
ID csv:101218026
description protein mago nashi homolog
nr
ID XP_012083713.1
description PREDICTED: protein mago nashi homolog [Jatropha curcas]
swissprot
ID O65806
description Protein mago nashi homolog OS=Euphorbia lagascae PE=2 SV=1
trembl
ID A0A067K9B5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14641 PE=4 SV=1
Gene Ontology
ID GO:0005730
description protein mago nashi homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01290: 6479-8615 , PASA_asmbl_01291: 6641-7177 , PASA_asmbl_01292: 7600-7740 , PASA_asmbl_01293: 6478-8595
cDNA
(Sanger)
(ID:Location)		 020_I10.ab1: 6505-8615 , 033_K07.ab1: 6484-8612 , 043_G19.ab1: 6481-8615

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103118_020 0.0 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
2 Hb_005914_200 0.0951405752 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
3 Hb_000707_020 0.1000963687 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
4 Hb_002518_290 0.1101290581 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
5 Hb_001307_210 0.1131222822 - - Os02g0814700 [Oryza sativa Japonica Group]
6 Hb_008748_020 0.1176669737 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
7 Hb_011377_020 0.1193316546 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
8 Hb_012539_020 0.1212233489 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
9 Hb_062135_020 0.1217549172 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
10 Hb_006718_010 0.1227739003 - - PREDICTED: histone H2AX-like [Elaeis guineensis]
11 Hb_002719_080 0.124848613 - - hypothetical protein POPTR_0006s27920g [Populus trichocarpa]
12 Hb_004754_070 0.1314374387 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
13 Hb_000976_250 0.1326634336 - - -
14 Hb_001780_050 0.1326955612 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
15 Hb_000236_150 0.1350583572 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
16 Hb_012395_130 0.1360925198 - - Os02g0814700 [Oryza sativa Japonica Group]
17 Hb_003777_040 0.1390936806 - - PREDICTED: sm-like protein LSM3A [Jatropha curcas]
18 Hb_001240_020 0.1391976115 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
19 Hb_005000_180 0.1395720897 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
20 Hb_000025_240 0.1398666393 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]

Gene co-expression network

sample Hb_103118_020 Hb_103118_020 Hb_005914_200 Hb_005914_200 Hb_103118_020--Hb_005914_200 Hb_000707_020 Hb_000707_020 Hb_103118_020--Hb_000707_020 Hb_002518_290 Hb_002518_290 Hb_103118_020--Hb_002518_290 Hb_001307_210 Hb_001307_210 Hb_103118_020--Hb_001307_210 Hb_008748_020 Hb_008748_020 Hb_103118_020--Hb_008748_020 Hb_011377_020 Hb_011377_020 Hb_103118_020--Hb_011377_020 Hb_001780_050 Hb_001780_050 Hb_005914_200--Hb_001780_050 Hb_000236_150 Hb_000236_150 Hb_005914_200--Hb_000236_150 Hb_012539_020 Hb_012539_020 Hb_005914_200--Hb_012539_020 Hb_004754_070 Hb_004754_070 Hb_005914_200--Hb_004754_070 Hb_000163_130 Hb_000163_130 Hb_005914_200--Hb_000163_130 Hb_000976_250 Hb_000976_250 Hb_005914_200--Hb_000976_250 Hb_012490_050 Hb_012490_050 Hb_000707_020--Hb_012490_050 Hb_000834_030 Hb_000834_030 Hb_000707_020--Hb_000834_030 Hb_000302_280 Hb_000302_280 Hb_000707_020--Hb_000302_280 Hb_138585_040 Hb_138585_040 Hb_000707_020--Hb_138585_040 Hb_001005_080 Hb_001005_080 Hb_000707_020--Hb_001005_080 Hb_000049_050 Hb_000049_050 Hb_000707_020--Hb_000049_050 Hb_062135_020 Hb_062135_020 Hb_002518_290--Hb_062135_020 Hb_002518_290--Hb_000976_250 Hb_002518_290--Hb_012539_020 Hb_002518_290--Hb_005914_200 Hb_002518_290--Hb_000236_150 Hb_003086_060 Hb_003086_060 Hb_002518_290--Hb_003086_060 Hb_001449_090 Hb_001449_090 Hb_001307_210--Hb_001449_090 Hb_001307_210--Hb_011377_020 Hb_003020_330 Hb_003020_330 Hb_001307_210--Hb_003020_330 Hb_006588_080 Hb_006588_080 Hb_001307_210--Hb_006588_080 Hb_012395_130 Hb_012395_130 Hb_001307_210--Hb_012395_130 Hb_008748_020--Hb_005914_200 Hb_004735_050 Hb_004735_050 Hb_008748_020--Hb_004735_050 Hb_000025_240 Hb_000025_240 Hb_008748_020--Hb_000025_240 Hb_008748_020--Hb_004754_070 Hb_006541_020 Hb_006541_020 Hb_008748_020--Hb_006541_020 Hb_004007_180 Hb_004007_180 Hb_008748_020--Hb_004007_180 Hb_000599_280 Hb_000599_280 Hb_011377_020--Hb_000599_280 Hb_011377_020--Hb_012395_130 Hb_011377_020--Hb_004754_070 Hb_011377_020--Hb_006588_080 Hb_011377_020--Hb_001780_050 Hb_011377_020--Hb_004007_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.48009 3.92894 8.80472 50.2717 13.4137 37.2399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
113.444 236.473 96.4546 76.3057 31.7363

CAGE analysis