Hb_000707_020

Information

Type -
Description -
Location Contig707: 28978-31876
Sequence    

Annotation

kegg
ID mus:103971809
description probable proteasome inhibitor
nr
ID KJB16938.1
description hypothetical protein B456_002G255500 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2NSX1
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G255500 PE=4 SV=1
Gene Ontology
ID GO:0000502
description probable proteasome inhibitor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55136: 28888-40059 , PASA_asmbl_55137: 28908-40067 , PASA_asmbl_55138: 31342-31677
cDNA
(Sanger)
(ID:Location)		 007_K02.ab1: 30698-39960 , 042_J21.ab1: 31045-39960

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000707_020 0.0 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
2 Hb_012490_050 0.0863018849 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]
3 Hb_000834_030 0.0917962664 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
4 Hb_000302_280 0.0954597211 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
5 Hb_138585_040 0.0962855295 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
6 Hb_001005_080 0.0979243053 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
7 Hb_000049_050 0.0985002436 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
8 Hb_103118_020 0.1000963687 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
9 Hb_001172_100 0.1014269055 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
10 Hb_001157_080 0.1053954445 - - zinc finger protein, putative [Ricinus communis]
11 Hb_000389_080 0.1065253424 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
12 Hb_005463_140 0.1074077109 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
13 Hb_005914_200 0.1093029147 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
14 Hb_000384_120 0.1100295734 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
15 Hb_000417_260 0.1122416332 - - protein with unknown function [Ricinus communis]
16 Hb_001240_020 0.1135983339 - - PREDICTED: uncharacterized protein LOC105641171 [Jatropha curcas]
17 Hb_012539_020 0.1148101159 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
18 Hb_004659_060 0.116330749 - - RAS-related GTP-binding family protein [Populus trichocarpa]
19 Hb_001484_010 0.1181305057 - - hypothetical protein POPTR_0005s07440g [Populus trichocarpa]
20 Hb_072922_020 0.1207849431 - - SNARE-like superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_000707_020 Hb_000707_020 Hb_012490_050 Hb_012490_050 Hb_000707_020--Hb_012490_050 Hb_000834_030 Hb_000834_030 Hb_000707_020--Hb_000834_030 Hb_000302_280 Hb_000302_280 Hb_000707_020--Hb_000302_280 Hb_138585_040 Hb_138585_040 Hb_000707_020--Hb_138585_040 Hb_001005_080 Hb_001005_080 Hb_000707_020--Hb_001005_080 Hb_000049_050 Hb_000049_050 Hb_000707_020--Hb_000049_050 Hb_012490_050--Hb_000834_030 Hb_005463_140 Hb_005463_140 Hb_012490_050--Hb_005463_140 Hb_011644_030 Hb_011644_030 Hb_012490_050--Hb_011644_030 Hb_000817_030 Hb_000817_030 Hb_012490_050--Hb_000817_030 Hb_004659_060 Hb_004659_060 Hb_012490_050--Hb_004659_060 Hb_000834_030--Hb_005463_140 Hb_003777_210 Hb_003777_210 Hb_000834_030--Hb_003777_210 Hb_001284_030 Hb_001284_030 Hb_000834_030--Hb_001284_030 Hb_000042_200 Hb_000042_200 Hb_000834_030--Hb_000042_200 Hb_072922_020 Hb_072922_020 Hb_000302_280--Hb_072922_020 Hb_000302_280--Hb_005463_140 Hb_001369_170 Hb_001369_170 Hb_000302_280--Hb_001369_170 Hb_000384_120 Hb_000384_120 Hb_000302_280--Hb_000384_120 Hb_003376_190 Hb_003376_190 Hb_000302_280--Hb_003376_190 Hb_138585_040--Hb_000049_050 Hb_001172_100 Hb_001172_100 Hb_138585_040--Hb_001172_100 Hb_002324_010 Hb_002324_010 Hb_138585_040--Hb_002324_010 Hb_138585_040--Hb_000384_120 Hb_002631_260 Hb_002631_260 Hb_138585_040--Hb_002631_260 Hb_005278_040 Hb_005278_040 Hb_138585_040--Hb_005278_040 Hb_000417_260 Hb_000417_260 Hb_001005_080--Hb_000417_260 Hb_001481_140 Hb_001481_140 Hb_001005_080--Hb_001481_140 Hb_001519_030 Hb_001519_030 Hb_001005_080--Hb_001519_030 Hb_007192_100 Hb_007192_100 Hb_001005_080--Hb_007192_100 Hb_152910_020 Hb_152910_020 Hb_001005_080--Hb_152910_020 Hb_001005_080--Hb_005463_140 Hb_000049_050--Hb_002631_260 Hb_000260_790 Hb_000260_790 Hb_000049_050--Hb_000260_790 Hb_000049_050--Hb_001172_100 Hb_005045_070 Hb_005045_070 Hb_000049_050--Hb_005045_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.84735 3.41169 3.0209 14.8398 3.08701 9.50812
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.8642 44.518 22.6754 18.3593 10.5857

CAGE analysis