Hb_002518_290

Information

Type -
Description -
Location Contig2518: 239064-242251
Sequence    

Annotation

kegg
ID rcu:RCOM_0730450
description acyl-CoA thioesterase, putative
nr
ID KHG20959.1
description Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
swissprot
ID Q5R833
description Acyl-coenzyme A thioesterase 13 OS=Pongo abelii GN=ACOT13 PE=2 SV=1
trembl
ID A0A0B0P9W8
description Acyl-coenzyme A thioesterase 13 OS=Gossypium arboreum GN=F383_26515 PE=4 SV=1
Gene Ontology
ID GO:0005777
description acyl-coenzyme a thioesterase 13-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26309: 239092-240352 , PASA_asmbl_26310: 240833-241583
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002518_290 0.0 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
2 Hb_062135_020 0.0769880149 - - PREDICTED: probable histone H2A variant 3 [Nicotiana sylvestris]
3 Hb_000976_250 0.0850390344 - - -
4 Hb_012539_020 0.0889790737 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
5 Hb_005914_200 0.0890587268 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
6 Hb_000236_150 0.0891124228 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
7 Hb_003086_060 0.0982052039 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
8 Hb_005474_060 0.1003963262 - - hypothetical protein PHAVU_011G019700g [Phaseolus vulgaris]
9 Hb_002719_080 0.1059371117 - - hypothetical protein POPTR_0006s27920g [Populus trichocarpa]
10 Hb_001780_050 0.1067890477 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
11 Hb_000389_080 0.1090042861 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
12 Hb_103118_020 0.1101290581 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
13 Hb_000163_210 0.1115716153 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
14 Hb_120823_010 0.1118698742 - - -
15 Hb_000224_090 0.1141499078 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
16 Hb_000260_200 0.1146868728 - - -
17 Hb_005000_180 0.1151740847 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
18 Hb_001076_020 0.1152442471 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
19 Hb_032969_030 0.119254145 - - calmodulin binding protein, putative [Ricinus communis]
20 Hb_012490_050 0.1200151219 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]

Gene co-expression network

sample Hb_002518_290 Hb_002518_290 Hb_062135_020 Hb_062135_020 Hb_002518_290--Hb_062135_020 Hb_000976_250 Hb_000976_250 Hb_002518_290--Hb_000976_250 Hb_012539_020 Hb_012539_020 Hb_002518_290--Hb_012539_020 Hb_005914_200 Hb_005914_200 Hb_002518_290--Hb_005914_200 Hb_000236_150 Hb_000236_150 Hb_002518_290--Hb_000236_150 Hb_003086_060 Hb_003086_060 Hb_002518_290--Hb_003086_060 Hb_005000_180 Hb_005000_180 Hb_062135_020--Hb_005000_180 Hb_000123_160 Hb_000123_160 Hb_062135_020--Hb_000123_160 Hb_062135_020--Hb_000976_250 Hb_062135_020--Hb_000236_150 Hb_000302_290 Hb_000302_290 Hb_062135_020--Hb_000302_290 Hb_000976_250--Hb_005914_200 Hb_000976_250--Hb_012539_020 Hb_005474_060 Hb_005474_060 Hb_000976_250--Hb_005474_060 Hb_032969_030 Hb_032969_030 Hb_000976_250--Hb_032969_030 Hb_000300_390 Hb_000300_390 Hb_000976_250--Hb_000300_390 Hb_000389_080 Hb_000389_080 Hb_012539_020--Hb_000389_080 Hb_012539_020--Hb_005914_200 Hb_001780_050 Hb_001780_050 Hb_012539_020--Hb_001780_050 Hb_012539_020--Hb_000300_390 Hb_002316_120 Hb_002316_120 Hb_012539_020--Hb_002316_120 Hb_005663_120 Hb_005663_120 Hb_012539_020--Hb_005663_120 Hb_005914_200--Hb_001780_050 Hb_005914_200--Hb_000236_150 Hb_004754_070 Hb_004754_070 Hb_005914_200--Hb_004754_070 Hb_000163_130 Hb_000163_130 Hb_005914_200--Hb_000163_130 Hb_000236_150--Hb_001780_050 Hb_000224_090 Hb_000224_090 Hb_000236_150--Hb_000224_090 Hb_000905_180 Hb_000905_180 Hb_000236_150--Hb_000905_180 Hb_000236_150--Hb_000163_130 Hb_000236_150--Hb_012539_020 Hb_003086_060--Hb_062135_020 Hb_003185_050 Hb_003185_050 Hb_003086_060--Hb_003185_050 Hb_003086_060--Hb_000236_150 Hb_001159_200 Hb_001159_200 Hb_003086_060--Hb_001159_200 Hb_002918_140 Hb_002918_140 Hb_003086_060--Hb_002918_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.26906 2.4473 3.17003 7.86447 5.47564 10.2888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.0792 56.0719 30.5721 12.0274 11.0055

CAGE analysis