Hb_008748_020

Information

Type -
Description -
Location Contig8748: 6796-8997
Sequence    

Annotation

kegg
ID rcu:RCOM_1740440
description 60S ribosomal protein L44
nr
ID KJB31844.1
description hypothetical protein B456_005G210700 [Gossypium raimondii]
swissprot
ID Q96499
description 60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3
trembl
ID A0A0D2RJ15
description Gossypium raimondii chromosome 5, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_005G210700 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l44

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008748_020 0.0 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
2 Hb_005914_200 0.090374951 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
3 Hb_004735_050 0.0942261409 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
4 Hb_000025_240 0.0975358114 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
5 Hb_004754_070 0.0978491596 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
6 Hb_006541_020 0.0983946921 - - unknown [Lotus japonicus]
7 Hb_004007_180 0.1022940762 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
8 Hb_012395_130 0.1046652525 - - Os02g0814700 [Oryza sativa Japonica Group]
9 Hb_011377_020 0.1051560471 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
10 Hb_006588_080 0.1083854951 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
11 Hb_000976_250 0.1091780984 - - -
12 Hb_000367_210 0.1102032566 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
13 Hb_001780_050 0.1119218657 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
14 Hb_103118_020 0.1176669737 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
15 Hb_002316_120 0.120773549 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
16 Hb_005054_040 0.1240899892 - - PREDICTED: 60S ribosomal protein L35a-1 [Gossypium raimondii]
17 Hb_187083_010 0.1249812173 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
18 Hb_000300_390 0.1256987141 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
19 Hb_014834_030 0.1270794812 - - -
20 Hb_000599_280 0.1272531574 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]

Gene co-expression network

sample Hb_008748_020 Hb_008748_020 Hb_005914_200 Hb_005914_200 Hb_008748_020--Hb_005914_200 Hb_004735_050 Hb_004735_050 Hb_008748_020--Hb_004735_050 Hb_000025_240 Hb_000025_240 Hb_008748_020--Hb_000025_240 Hb_004754_070 Hb_004754_070 Hb_008748_020--Hb_004754_070 Hb_006541_020 Hb_006541_020 Hb_008748_020--Hb_006541_020 Hb_004007_180 Hb_004007_180 Hb_008748_020--Hb_004007_180 Hb_001780_050 Hb_001780_050 Hb_005914_200--Hb_001780_050 Hb_000236_150 Hb_000236_150 Hb_005914_200--Hb_000236_150 Hb_012539_020 Hb_012539_020 Hb_005914_200--Hb_012539_020 Hb_005914_200--Hb_004754_070 Hb_000163_130 Hb_000163_130 Hb_005914_200--Hb_000163_130 Hb_000976_250 Hb_000976_250 Hb_005914_200--Hb_000976_250 Hb_006588_080 Hb_006588_080 Hb_004735_050--Hb_006588_080 Hb_004735_050--Hb_004007_180 Hb_000635_080 Hb_000635_080 Hb_004735_050--Hb_000635_080 Hb_000878_020 Hb_000878_020 Hb_004735_050--Hb_000878_020 Hb_002316_120 Hb_002316_120 Hb_004735_050--Hb_002316_120 Hb_000025_240--Hb_006541_020 Hb_000025_240--Hb_005914_200 Hb_006718_010 Hb_006718_010 Hb_000025_240--Hb_006718_010 Hb_014834_030 Hb_014834_030 Hb_000025_240--Hb_014834_030 Hb_002025_300 Hb_002025_300 Hb_000025_240--Hb_002025_300 Hb_012395_130 Hb_012395_130 Hb_004754_070--Hb_012395_130 Hb_004754_070--Hb_001780_050 Hb_004754_070--Hb_000163_130 Hb_011377_020 Hb_011377_020 Hb_004754_070--Hb_011377_020 Hb_004754_070--Hb_004007_180 Hb_006541_020--Hb_006718_010 Hb_007520_060 Hb_007520_060 Hb_006541_020--Hb_007520_060 Hb_000367_210 Hb_000367_210 Hb_006541_020--Hb_000367_210 Hb_000367_030 Hb_000367_030 Hb_006541_020--Hb_000367_030 Hb_000270_720 Hb_000270_720 Hb_004007_180--Hb_000270_720 Hb_004007_180--Hb_002316_120 Hb_000599_280 Hb_000599_280 Hb_004007_180--Hb_000599_280 Hb_004007_180--Hb_006588_080 Hb_000789_110 Hb_000789_110 Hb_004007_180--Hb_000789_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.9905 15.2557 39.7079 172.523 31.7462 172.089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
311.904 820.302 236.812 125.032 57.0137

CAGE analysis