Hb_000878_020

Information

Type -
Description -
Location Contig878: 45901-48604
Sequence    

Annotation

kegg
ID rcu:RCOM_0422060
description hypothetical protein
nr
ID XP_012066984.1
description PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4W5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02958 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61292: 45835-48841 , PASA_asmbl_61293: 47107-47344
cDNA
(Sanger)
(ID:Location)		 026_D16.ab1: 45835-48429 , 036_I08.ab1: 45878-48719

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000878_020 0.0 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
2 Hb_006588_080 0.0709779881 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
3 Hb_000110_170 0.0734083775 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_001386_050 0.0803863796 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
5 Hb_008948_050 0.0882412289 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
6 Hb_002344_070 0.0892228361 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
7 Hb_000915_120 0.0918665624 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
8 Hb_004735_050 0.0925571561 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
9 Hb_120823_010 0.0936960115 - - -
10 Hb_000111_100 0.1035935132 - - PREDICTED: NADPH:quinone oxidoreductase-like [Camelina sativa]
11 Hb_000203_020 0.103624265 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
12 Hb_000239_030 0.1054833652 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
13 Hb_000062_390 0.1085318321 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
14 Hb_002006_130 0.10860524 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
15 Hb_000331_700 0.1087721851 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
16 Hb_002909_130 0.1089420881 - - Uncharacterized protein isoform 1 [Theobroma cacao]
17 Hb_007497_030 0.1095225389 - - mutt domain protein, putative [Ricinus communis]
18 Hb_000881_080 0.1098920625 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000645_140 0.1104033508 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
20 Hb_000300_390 0.11254741 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]

Gene co-expression network

sample Hb_000878_020 Hb_000878_020 Hb_006588_080 Hb_006588_080 Hb_000878_020--Hb_006588_080 Hb_000110_170 Hb_000110_170 Hb_000878_020--Hb_000110_170 Hb_001386_050 Hb_001386_050 Hb_000878_020--Hb_001386_050 Hb_008948_050 Hb_008948_050 Hb_000878_020--Hb_008948_050 Hb_002344_070 Hb_002344_070 Hb_000878_020--Hb_002344_070 Hb_000915_120 Hb_000915_120 Hb_000878_020--Hb_000915_120 Hb_004735_050 Hb_004735_050 Hb_006588_080--Hb_004735_050 Hb_000635_080 Hb_000635_080 Hb_006588_080--Hb_000635_080 Hb_120823_010 Hb_120823_010 Hb_006588_080--Hb_120823_010 Hb_002316_120 Hb_002316_120 Hb_006588_080--Hb_002316_120 Hb_000172_420 Hb_000172_420 Hb_006588_080--Hb_000172_420 Hb_000110_170--Hb_006588_080 Hb_003540_200 Hb_003540_200 Hb_000110_170--Hb_003540_200 Hb_003020_330 Hb_003020_330 Hb_000110_170--Hb_003020_330 Hb_000110_170--Hb_120823_010 Hb_001225_010 Hb_001225_010 Hb_000110_170--Hb_001225_010 Hb_001386_050--Hb_008948_050 Hb_001386_050--Hb_002344_070 Hb_000853_240 Hb_000853_240 Hb_001386_050--Hb_000853_240 Hb_001386_050--Hb_006588_080 Hb_000805_130 Hb_000805_130 Hb_001386_050--Hb_000805_130 Hb_000645_140 Hb_000645_140 Hb_008948_050--Hb_000645_140 Hb_002588_010 Hb_002588_010 Hb_008948_050--Hb_002588_010 Hb_000042_260 Hb_000042_260 Hb_008948_050--Hb_000042_260 Hb_002909_130 Hb_002909_130 Hb_008948_050--Hb_002909_130 Hb_019516_100 Hb_019516_100 Hb_008948_050--Hb_019516_100 Hb_000258_280 Hb_000258_280 Hb_002344_070--Hb_000258_280 Hb_002344_070--Hb_008948_050 Hb_007497_030 Hb_007497_030 Hb_002344_070--Hb_007497_030 Hb_012053_010 Hb_012053_010 Hb_002344_070--Hb_012053_010 Hb_000203_020 Hb_000203_020 Hb_000915_120--Hb_000203_020 Hb_002838_030 Hb_002838_030 Hb_000915_120--Hb_002838_030 Hb_002006_130 Hb_002006_130 Hb_000915_120--Hb_002006_130 Hb_000915_120--Hb_002588_010 Hb_000915_120--Hb_006588_080 Hb_000062_390 Hb_000062_390 Hb_000915_120--Hb_000062_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.0012 27.0533 30.7033 47.6084 29.9849 32.9149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
134.451 377.318 114.318 42.5902 34.2758

CAGE analysis