Hb_012053_010

Information

Type -
Description -
Location Contig12053: 16498-20489
Sequence    

Annotation

kegg
ID rcu:RCOM_1185500
description srpk, putative (EC:2.7.12.1)
nr
ID XP_002527427.1
description srpk, putative [Ricinus communis]
swissprot
ID P36616
description Protein kinase dsk1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsk1 PE=3 SV=2
trembl
ID B9SN58
description Srpk, putative OS=Ricinus communis GN=RCOM_1185500 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase srpk-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06364: 16589-16936 , PASA_asmbl_06365: 16972-20464 , PASA_asmbl_06366: 17507-20483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012053_010 0.0 - - srpk, putative [Ricinus communis]
2 Hb_002105_030 0.1146210847 - - -
3 Hb_002344_070 0.1170461147 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
4 Hb_000878_020 0.1183752779 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
5 Hb_003540_200 0.1188100469 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
6 Hb_001266_030 0.120783975 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like [Jatropha curcas]
7 Hb_000110_170 0.122140928 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_138455_010 0.1253187187 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_027892_040 0.1308169991 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
10 Hb_044653_060 0.1309706381 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
11 Hb_001449_090 0.1367696576 - - PREDICTED: NHL repeat-containing protein 2 isoform X2 [Jatropha curcas]
12 Hb_000431_160 0.139830095 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
13 Hb_000258_280 0.1406511266 - - PREDICTED: probable ran guanine nucleotide release factor [Jatropha curcas]
14 Hb_001386_050 0.143541146 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
15 Hb_000045_210 0.1439619911 - - -
16 Hb_012053_050 0.1473220369 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
17 Hb_004162_180 0.1489707276 - - zinc finger protein, putative [Ricinus communis]
18 Hb_001863_420 0.15064818 - - PREDICTED: probable protein phosphatase 2C 10, partial [Vitis vinifera]
19 Hb_004100_090 0.1529771658 - - RecName: Full=Profilin-6; AltName: Full=Pollen allergen Hev b 8.0204; AltName: Allergen=Hev b 8.0204 [Hevea brasiliensis]
20 Hb_000589_160 0.154273664 - - PREDICTED: expansin-A4 [Jatropha curcas]

Gene co-expression network

sample Hb_012053_010 Hb_012053_010 Hb_002105_030 Hb_002105_030 Hb_012053_010--Hb_002105_030 Hb_002344_070 Hb_002344_070 Hb_012053_010--Hb_002344_070 Hb_000878_020 Hb_000878_020 Hb_012053_010--Hb_000878_020 Hb_003540_200 Hb_003540_200 Hb_012053_010--Hb_003540_200 Hb_001266_030 Hb_001266_030 Hb_012053_010--Hb_001266_030 Hb_000110_170 Hb_000110_170 Hb_012053_010--Hb_000110_170 Hb_001386_050 Hb_001386_050 Hb_002105_030--Hb_001386_050 Hb_001449_090 Hb_001449_090 Hb_002105_030--Hb_001449_090 Hb_002105_030--Hb_002344_070 Hb_146225_010 Hb_146225_010 Hb_002105_030--Hb_146225_010 Hb_000282_070 Hb_000282_070 Hb_002105_030--Hb_000282_070 Hb_000258_280 Hb_000258_280 Hb_002344_070--Hb_000258_280 Hb_002344_070--Hb_000878_020 Hb_002344_070--Hb_001386_050 Hb_008948_050 Hb_008948_050 Hb_002344_070--Hb_008948_050 Hb_007497_030 Hb_007497_030 Hb_002344_070--Hb_007497_030 Hb_006588_080 Hb_006588_080 Hb_000878_020--Hb_006588_080 Hb_000878_020--Hb_000110_170 Hb_000878_020--Hb_001386_050 Hb_000878_020--Hb_008948_050 Hb_000915_120 Hb_000915_120 Hb_000878_020--Hb_000915_120 Hb_003540_200--Hb_000110_170 Hb_003020_330 Hb_003020_330 Hb_003540_200--Hb_003020_330 Hb_001225_010 Hb_001225_010 Hb_003540_200--Hb_001225_010 Hb_000291_270 Hb_000291_270 Hb_003540_200--Hb_000291_270 Hb_154141_030 Hb_154141_030 Hb_003540_200--Hb_154141_030 Hb_044653_060 Hb_044653_060 Hb_001266_030--Hb_044653_060 Hb_000045_210 Hb_000045_210 Hb_001266_030--Hb_000045_210 Hb_027892_040 Hb_027892_040 Hb_001266_030--Hb_027892_040 Hb_000431_160 Hb_000431_160 Hb_001266_030--Hb_000431_160 Hb_000617_110 Hb_000617_110 Hb_001266_030--Hb_000617_110 Hb_000110_170--Hb_006588_080 Hb_000110_170--Hb_003020_330 Hb_120823_010 Hb_120823_010 Hb_000110_170--Hb_120823_010 Hb_000110_170--Hb_001225_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.46791 4.20602 4.95697 7.80017 3.4709 4.2029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3376 96.1898 27.2206 6.90021 6.06507

CAGE analysis