Hb_154141_030

Information

Type -
Description -
Location Contig154141: 8866-9178
Sequence    

Annotation

kegg
ID fve:101308981
description probable histone H2AXa-like
nr
ID XP_011048890.1
description PREDICTED: histone H2AX [Populus euphratica]
swissprot
ID O65759
description Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1
trembl
ID V4TA53
description Histone H2A OS=Citrus clementina GN=CICLE_v10002804mg PE=3 SV=1
Gene Ontology
ID GO:0000786
description histone h2ax-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154141_030 0.0 - - PREDICTED: histone H2AX [Populus euphratica]
2 Hb_000768_130 0.0903053368 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
3 Hb_002900_130 0.0904629653 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
4 Hb_003020_330 0.0997317232 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
5 Hb_007313_080 0.1126524999 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
6 Hb_002811_090 0.1163657816 - - 40S ribosomal protein S24A [Hevea brasiliensis]
7 Hb_002838_030 0.1193245054 - - 40S ribosomal protein S25A [Hevea brasiliensis]
8 Hb_003540_200 0.1231155808 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
9 Hb_000215_330 0.1234291725 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
10 Hb_005306_070 0.1241158042 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
11 Hb_007120_090 0.1281517025 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
12 Hb_027472_160 0.1291328076 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
13 Hb_001635_130 0.1298924058 - - PREDICTED: 60S ribosomal protein L28-2-like [Jatropha curcas]
14 Hb_000739_140 0.1299825545 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
15 Hb_000291_270 0.1303832361 - - hypothetical protein JCGZ_12006 [Jatropha curcas]
16 Hb_000997_120 0.1351314416 - - 40S ribosomal protein S15E [Hevea brasiliensis]
17 Hb_003057_020 0.1356188785 - - 40S ribosomal protein S23, putative [Ricinus communis]
18 Hb_005054_040 0.1392386363 - - PREDICTED: 60S ribosomal protein L35a-1 [Gossypium raimondii]
19 Hb_027684_020 0.139646732 - - ribosomal protein S10 (mitochondrion) [Nicotiana tabacum]
20 Hb_001225_010 0.1457835543 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_154141_030 Hb_154141_030 Hb_000768_130 Hb_000768_130 Hb_154141_030--Hb_000768_130 Hb_002900_130 Hb_002900_130 Hb_154141_030--Hb_002900_130 Hb_003020_330 Hb_003020_330 Hb_154141_030--Hb_003020_330 Hb_007313_080 Hb_007313_080 Hb_154141_030--Hb_007313_080 Hb_002811_090 Hb_002811_090 Hb_154141_030--Hb_002811_090 Hb_002838_030 Hb_002838_030 Hb_154141_030--Hb_002838_030 Hb_000768_130--Hb_007313_080 Hb_000739_140 Hb_000739_140 Hb_000768_130--Hb_000739_140 Hb_000215_330 Hb_000215_330 Hb_000768_130--Hb_000215_330 Hb_000768_130--Hb_003020_330 Hb_005306_070 Hb_005306_070 Hb_000768_130--Hb_005306_070 Hb_002900_130--Hb_000768_130 Hb_002900_130--Hb_007313_080 Hb_001635_130 Hb_001635_130 Hb_002900_130--Hb_001635_130 Hb_002900_130--Hb_003020_330 Hb_002900_130--Hb_000739_140 Hb_003020_330--Hb_002838_030 Hb_003020_330--Hb_007313_080 Hb_007120_090 Hb_007120_090 Hb_003020_330--Hb_007120_090 Hb_011377_020 Hb_011377_020 Hb_003020_330--Hb_011377_020 Hb_000110_170 Hb_000110_170 Hb_003020_330--Hb_000110_170 Hb_027472_160 Hb_027472_160 Hb_003020_330--Hb_027472_160 Hb_000454_180 Hb_000454_180 Hb_007313_080--Hb_000454_180 Hb_007313_080--Hb_027472_160 Hb_003057_020 Hb_003057_020 Hb_002811_090--Hb_003057_020 Hb_000212_210 Hb_000212_210 Hb_002811_090--Hb_000212_210 Hb_002811_090--Hb_007120_090 Hb_002811_090--Hb_027472_160 Hb_001789_050 Hb_001789_050 Hb_002811_090--Hb_001789_050 Hb_007245_080 Hb_007245_080 Hb_002811_090--Hb_007245_080 Hb_000997_120 Hb_000997_120 Hb_002838_030--Hb_000997_120 Hb_002838_030--Hb_007120_090 Hb_000915_120 Hb_000915_120 Hb_002838_030--Hb_000915_120 Hb_000948_220 Hb_000948_220 Hb_002838_030--Hb_000948_220 Hb_000087_130 Hb_000087_130 Hb_002838_030--Hb_000087_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.4831 4.94077 20.1956 39.458 2.95834 15.3033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.2082 115.745 24.5045 19.7821 12.4223

CAGE analysis