Hb_002811_090

Information

Type -
Description -
Location Contig2811: 81391-84073
Sequence    

Annotation

kegg
ID pmum:103318569
description 40S ribosomal protein S24-1
nr
ID ADR71266.1
description 40S ribosomal protein S24A [Hevea brasiliensis]
swissprot
ID Q8LC83
description 40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2
trembl
ID I3NMM9
description 40S ribosomal protein S24 OS=Hevea brasiliensis GN=RPS24A PE=2 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s24-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29399: 81400-84073
cDNA
(Sanger)
(ID:Location)		 009_C23.ab1: 81400-84073 , 039_G14.ab1: 81400-84017

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_090 0.0 - - 40S ribosomal protein S24A [Hevea brasiliensis]
2 Hb_003057_020 0.0824109461 - - 40S ribosomal protein S23, putative [Ricinus communis]
3 Hb_000212_210 0.0846486938 - - unnamed protein product [Coffea canephora]
4 Hb_007120_090 0.0915253768 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
5 Hb_027472_160 0.0958038809 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
6 Hb_001789_050 0.0971668537 - - 60S ribosomal protein L36-2 [Morus notabilis]
7 Hb_007245_080 0.0993261937 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
8 Hb_000289_070 0.1057559786 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012251_010 0.1083678805 - - -
10 Hb_000676_160 0.1089027565 - - folate carrier protein, putative [Ricinus communis]
11 Hb_009476_020 0.1096072762 - - tryptophan biosynthesis protein, putative [Ricinus communis]
12 Hb_154141_030 0.1163657816 - - PREDICTED: histone H2AX [Populus euphratica]
13 Hb_000203_020 0.1176242215 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
14 Hb_000997_120 0.1190515743 - - 40S ribosomal protein S15E [Hevea brasiliensis]
15 Hb_000735_040 0.1212540339 - - 60S ribosomal protein L32A [Hevea brasiliensis]
16 Hb_000948_220 0.1223888442 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
17 Hb_174865_010 0.1223949421 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
18 Hb_000576_060 0.1225551015 - - truncated hemoglobin [Populus tremula x Populus tremuloides]
19 Hb_006028_020 0.1237031623 - - PREDICTED: 60S ribosomal protein L38-like [Cicer arietinum]
20 Hb_000768_130 0.1268593373 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]

Gene co-expression network

sample Hb_002811_090 Hb_002811_090 Hb_003057_020 Hb_003057_020 Hb_002811_090--Hb_003057_020 Hb_000212_210 Hb_000212_210 Hb_002811_090--Hb_000212_210 Hb_007120_090 Hb_007120_090 Hb_002811_090--Hb_007120_090 Hb_027472_160 Hb_027472_160 Hb_002811_090--Hb_027472_160 Hb_001789_050 Hb_001789_050 Hb_002811_090--Hb_001789_050 Hb_007245_080 Hb_007245_080 Hb_002811_090--Hb_007245_080 Hb_003057_020--Hb_000212_210 Hb_000454_180 Hb_000454_180 Hb_003057_020--Hb_000454_180 Hb_003057_020--Hb_027472_160 Hb_003057_020--Hb_001789_050 Hb_003057_020--Hb_007120_090 Hb_000212_210--Hb_001789_050 Hb_000212_210--Hb_007120_090 Hb_000042_260 Hb_000042_260 Hb_000212_210--Hb_000042_260 Hb_000272_050 Hb_000272_050 Hb_000212_210--Hb_000272_050 Hb_000997_120 Hb_000997_120 Hb_007120_090--Hb_000997_120 Hb_007120_090--Hb_001789_050 Hb_002838_030 Hb_002838_030 Hb_007120_090--Hb_002838_030 Hb_000948_220 Hb_000948_220 Hb_007120_090--Hb_000948_220 Hb_000676_160 Hb_000676_160 Hb_007120_090--Hb_000676_160 Hb_012395_130 Hb_012395_130 Hb_007120_090--Hb_012395_130 Hb_003020_330 Hb_003020_330 Hb_027472_160--Hb_003020_330 Hb_000645_140 Hb_000645_140 Hb_027472_160--Hb_000645_140 Hb_000915_120 Hb_000915_120 Hb_027472_160--Hb_000915_120 Hb_027472_160--Hb_000948_220 Hb_027472_160--Hb_007120_090 Hb_000576_060 Hb_000576_060 Hb_001789_050--Hb_000576_060 Hb_001789_050--Hb_000997_120 Hb_001789_050--Hb_007245_080 Hb_001789_050--Hb_000676_160 Hb_009476_020 Hb_009476_020 Hb_007245_080--Hb_009476_020 Hb_002235_080 Hb_002235_080 Hb_007245_080--Hb_002235_080 Hb_007245_080--Hb_000576_060 Hb_000735_040 Hb_000735_040 Hb_007245_080--Hb_000735_040 Hb_007245_080--Hb_007120_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.1547 17.754 73.6319 88.2396 28.1651 55.8767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
98.4267 379.042 49.5305 53.7104 42.5062

CAGE analysis