Hb_000272_050

Information

Type -
Description -
Location Contig272: 61944-63836
Sequence    

Annotation

kegg
ID vvi:100852602
description 60S ribosomal protein L39-3-like
nr
ID KDP38638.1
description hypothetical protein JCGZ_03991 [Jatropha curcas]
swissprot
ID Q5SMI4
description 60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1
trembl
ID A0A067KUJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03991 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l39-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28465: 61906-62431
cDNA
(Sanger)
(ID:Location)		 001_D14.ab1: 61906-62431 , 001_J18.ab1: 61906-62431 , 025_G01.ab1: 61913-62431

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000272_050 0.0 - - hypothetical protein JCGZ_03991 [Jatropha curcas]
2 Hb_001221_310 0.09525119 - - sec61 gamma subunit, putative [Ricinus communis]
3 Hb_003226_220 0.1023358013 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
4 Hb_000042_260 0.1034054224 - - PREDICTED: uncharacterized protein LOC105632814 [Jatropha curcas]
5 Hb_019516_100 0.103890023 - - 40S ribosomal protein S14, putative [Ricinus communis]
6 Hb_000212_210 0.1053319661 - - unnamed protein product [Coffea canephora]
7 Hb_026398_010 0.1086329621 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
8 Hb_000617_090 0.1112243948 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
9 Hb_012251_010 0.1115663006 - - -
10 Hb_000045_250 0.1176412515 - - PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
11 Hb_000312_090 0.1182819734 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
12 Hb_001214_140 0.1185986891 - - 60S ribosomal protein L27a, putative [Ricinus communis]
13 Hb_004007_180 0.1188049726 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
14 Hb_000915_120 0.1190620844 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
15 Hb_000203_020 0.1203736437 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
16 Hb_000159_070 0.1209916204 - - JHL03K20.4 [Jatropha curcas]
17 Hb_001488_400 0.1222343063 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
18 Hb_002897_080 0.1225622643 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
19 Hb_003988_040 0.1227834703 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
20 Hb_000062_650 0.1253070121 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]

Gene co-expression network

sample Hb_000272_050 Hb_000272_050 Hb_001221_310 Hb_001221_310 Hb_000272_050--Hb_001221_310 Hb_003226_220 Hb_003226_220 Hb_000272_050--Hb_003226_220 Hb_000042_260 Hb_000042_260 Hb_000272_050--Hb_000042_260 Hb_019516_100 Hb_019516_100 Hb_000272_050--Hb_019516_100 Hb_000212_210 Hb_000212_210 Hb_000272_050--Hb_000212_210 Hb_026398_010 Hb_026398_010 Hb_000272_050--Hb_026398_010 Hb_000312_090 Hb_000312_090 Hb_001221_310--Hb_000312_090 Hb_000699_160 Hb_000699_160 Hb_001221_310--Hb_000699_160 Hb_006452_040 Hb_006452_040 Hb_001221_310--Hb_006452_040 Hb_000617_090 Hb_000617_090 Hb_001221_310--Hb_000617_090 Hb_010672_060 Hb_010672_060 Hb_001221_310--Hb_010672_060 Hb_001155_040 Hb_001155_040 Hb_001221_310--Hb_001155_040 Hb_000212_470 Hb_000212_470 Hb_003226_220--Hb_000212_470 Hb_001571_090 Hb_001571_090 Hb_003226_220--Hb_001571_090 Hb_003988_040 Hb_003988_040 Hb_003226_220--Hb_003988_040 Hb_001575_030 Hb_001575_030 Hb_003226_220--Hb_001575_030 Hb_005463_060 Hb_005463_060 Hb_003226_220--Hb_005463_060 Hb_000042_260--Hb_019516_100 Hb_172221_010 Hb_172221_010 Hb_000042_260--Hb_172221_010 Hb_002588_010 Hb_002588_010 Hb_000042_260--Hb_002588_010 Hb_002909_130 Hb_002909_130 Hb_000042_260--Hb_002909_130 Hb_000329_020 Hb_000329_020 Hb_000042_260--Hb_000329_020 Hb_000042_260--Hb_026398_010 Hb_019516_100--Hb_002588_010 Hb_001158_230 Hb_001158_230 Hb_019516_100--Hb_001158_230 Hb_000062_390 Hb_000062_390 Hb_019516_100--Hb_000062_390 Hb_019516_100--Hb_172221_010 Hb_009384_020 Hb_009384_020 Hb_019516_100--Hb_009384_020 Hb_002811_090 Hb_002811_090 Hb_000212_210--Hb_002811_090 Hb_003057_020 Hb_003057_020 Hb_000212_210--Hb_003057_020 Hb_001789_050 Hb_001789_050 Hb_000212_210--Hb_001789_050 Hb_007120_090 Hb_007120_090 Hb_000212_210--Hb_007120_090 Hb_000212_210--Hb_000042_260 Hb_026398_010--Hb_172221_010 Hb_011311_010 Hb_011311_010 Hb_026398_010--Hb_011311_010 Hb_002660_030 Hb_002660_030 Hb_026398_010--Hb_002660_030 Hb_026398_010--Hb_000329_020 Hb_026398_010--Hb_002588_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.9901 17.3486 36.2099 100.761 64.3208 66.6581
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
181.309 418.949 59.3972 43.3214 24.12

CAGE analysis