Hb_003226_220

Information

Type -
Description -
Location Contig3226: 168231-176256
Sequence    

Annotation

kegg
ID cic:CICLE_v10022836mg
description hypothetical protein
nr
ID XP_006444360.1
description hypothetical protein CICLE_v10022836mg [Citrus clementina]
swissprot
ID Q9LZH8
description Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis thaliana GN=OEP164 PE=2 SV=1
trembl
ID A0A067HGQ4
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032960mg PE=4 SV=1
Gene Ontology
ID GO:0009536
description outer envelope pore protein 16- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34187: 168310-168527 , PASA_asmbl_34188: 168310-168786
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003226_220 0.0 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
2 Hb_000212_470 0.0923210073 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]
3 Hb_001571_090 0.0990691152 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
4 Hb_000272_050 0.1023358013 - - hypothetical protein JCGZ_03991 [Jatropha curcas]
5 Hb_003988_040 0.1029955754 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
6 Hb_001575_030 0.1078854689 - - hypothetical protein POPTR_0022s00880g [Populus trichocarpa]
7 Hb_005463_060 0.1091537762 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
8 Hb_001488_400 0.1148165114 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
9 Hb_002232_470 0.11513561 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000236_460 0.116011855 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
11 Hb_003607_170 0.1161174555 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
12 Hb_026398_010 0.1177480083 - - hypothetical protein B456_010G132100 [Gossypium raimondii]
13 Hb_023732_060 0.1180142085 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
14 Hb_001085_010 0.1195684183 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Populus euphratica]
15 Hb_000820_130 0.1223291398 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
16 Hb_002897_080 0.1226894993 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
17 Hb_001610_130 0.1264113826 - - 40S ribosomal protein S30 [Medicago truncatula]
18 Hb_001214_140 0.1270806844 - - 60S ribosomal protein L27a, putative [Ricinus communis]
19 Hb_021924_010 0.1278952066 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
20 Hb_009554_010 0.1293424827 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]

Gene co-expression network

sample Hb_003226_220 Hb_003226_220 Hb_000212_470 Hb_000212_470 Hb_003226_220--Hb_000212_470 Hb_001571_090 Hb_001571_090 Hb_003226_220--Hb_001571_090 Hb_000272_050 Hb_000272_050 Hb_003226_220--Hb_000272_050 Hb_003988_040 Hb_003988_040 Hb_003226_220--Hb_003988_040 Hb_001575_030 Hb_001575_030 Hb_003226_220--Hb_001575_030 Hb_005463_060 Hb_005463_060 Hb_003226_220--Hb_005463_060 Hb_008847_020 Hb_008847_020 Hb_000212_470--Hb_008847_020 Hb_000820_130 Hb_000820_130 Hb_000212_470--Hb_000820_130 Hb_010883_150 Hb_010883_150 Hb_000212_470--Hb_010883_150 Hb_002835_320 Hb_002835_320 Hb_000212_470--Hb_002835_320 Hb_000236_460 Hb_000236_460 Hb_000212_470--Hb_000236_460 Hb_000661_240 Hb_000661_240 Hb_001571_090--Hb_000661_240 Hb_007290_080 Hb_007290_080 Hb_001571_090--Hb_007290_080 Hb_009554_010 Hb_009554_010 Hb_001571_090--Hb_009554_010 Hb_026398_010 Hb_026398_010 Hb_001571_090--Hb_026398_010 Hb_001769_100 Hb_001769_100 Hb_001571_090--Hb_001769_100 Hb_001221_310 Hb_001221_310 Hb_000272_050--Hb_001221_310 Hb_000042_260 Hb_000042_260 Hb_000272_050--Hb_000042_260 Hb_019516_100 Hb_019516_100 Hb_000272_050--Hb_019516_100 Hb_000212_210 Hb_000212_210 Hb_000272_050--Hb_000212_210 Hb_000272_050--Hb_026398_010 Hb_003988_040--Hb_005463_060 Hb_003607_170 Hb_003607_170 Hb_003988_040--Hb_003607_170 Hb_000159_070 Hb_000159_070 Hb_003988_040--Hb_000159_070 Hb_002897_080 Hb_002897_080 Hb_003988_040--Hb_002897_080 Hb_000134_020 Hb_000134_020 Hb_003988_040--Hb_000134_020 Hb_000312_090 Hb_000312_090 Hb_003988_040--Hb_000312_090 Hb_001610_130 Hb_001610_130 Hb_001575_030--Hb_001610_130 Hb_015978_070 Hb_015978_070 Hb_001575_030--Hb_015978_070 Hb_001575_030--Hb_001571_090 Hb_002232_470 Hb_002232_470 Hb_001575_030--Hb_002232_470 Hb_000419_130 Hb_000419_130 Hb_001575_030--Hb_000419_130 Hb_005463_060--Hb_003607_170 Hb_005463_060--Hb_002897_080 Hb_003638_080 Hb_003638_080 Hb_005463_060--Hb_003638_080 Hb_000046_260 Hb_000046_260 Hb_005463_060--Hb_000046_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.35114 1.36436 1.65367 7.21524 4.00077 8.51385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.4698 27.8792 3.64384 4.10696 1.07644

CAGE analysis