Hb_002897_080

Information

Type -
Description -
Location Contig2897: 78641-80429
Sequence    

Annotation

kegg
ID pop:POPTR_0019s08760g
description POPTRDRAFT_738723; hypothetical protein
nr
ID KDP21635.1
description hypothetical protein JCGZ_03306 [Jatropha curcas]
swissprot
ID P48505
description Ubiquinol-cytochrome c reductase complex 6.7 kDa protein OS=Solanum tuberosum PE=1 SV=2
trembl
ID A0A067JNR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03306 PE=4 SV=1
Gene Ontology
ID GO:0005739
description ubiquinol-cytochrome c reductase complex kda protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30325: 78643-80442
cDNA
(Sanger)
(ID:Location)		 007_D01.ab1: 78676-80407 , 042_J07.ab1: 78643-80442

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002897_080 0.0 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
2 Hb_000526_150 0.0867850609 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
3 Hb_000312_090 0.0896733399 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
4 Hb_009851_100 0.0901052902 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
5 Hb_003988_040 0.0923519705 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
6 Hb_000159_070 0.103225672 - - JHL03K20.4 [Jatropha curcas]
7 Hb_000617_090 0.1034421205 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
8 Hb_010810_020 0.1039526113 - - PREDICTED: uncharacterized protein LOC105638766 [Jatropha curcas]
9 Hb_002311_320 0.1056896979 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
10 Hb_000161_050 0.1061335398 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002781_020 0.1064848417 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
12 Hb_005463_060 0.1066815797 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
13 Hb_003607_170 0.1070797808 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
14 Hb_001045_080 0.1086521593 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
15 Hb_002835_320 0.1098991525 - - 60S ribosomal protein L27B [Hevea brasiliensis]
16 Hb_000134_020 0.1101182253 - - thioredoxin-like family protein [Hevea brasiliensis]
17 Hb_002571_020 0.1118111007 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
18 Hb_000046_260 0.1120987268 - - acyl carrier protein, putative [Ricinus communis]
19 Hb_182305_020 0.1136992563 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Jatropha curcas]
20 Hb_008847_020 0.1155546776 - - 40S ribosomal protein S17C [Hevea brasiliensis]

Gene co-expression network

sample Hb_002897_080 Hb_002897_080 Hb_000526_150 Hb_000526_150 Hb_002897_080--Hb_000526_150 Hb_000312_090 Hb_000312_090 Hb_002897_080--Hb_000312_090 Hb_009851_100 Hb_009851_100 Hb_002897_080--Hb_009851_100 Hb_003988_040 Hb_003988_040 Hb_002897_080--Hb_003988_040 Hb_000159_070 Hb_000159_070 Hb_002897_080--Hb_000159_070 Hb_000617_090 Hb_000617_090 Hb_002897_080--Hb_000617_090 Hb_001269_270 Hb_001269_270 Hb_000526_150--Hb_001269_270 Hb_001638_260 Hb_001638_260 Hb_000526_150--Hb_001638_260 Hb_000526_150--Hb_009851_100 Hb_000545_150 Hb_000545_150 Hb_000526_150--Hb_000545_150 Hb_000634_050 Hb_000634_050 Hb_000526_150--Hb_000634_050 Hb_001818_020 Hb_001818_020 Hb_000526_150--Hb_001818_020 Hb_000312_090--Hb_000617_090 Hb_001221_310 Hb_001221_310 Hb_000312_090--Hb_001221_310 Hb_000312_090--Hb_009851_100 Hb_003125_150 Hb_003125_150 Hb_000312_090--Hb_003125_150 Hb_001045_080 Hb_001045_080 Hb_000312_090--Hb_001045_080 Hb_002835_320 Hb_002835_320 Hb_000312_090--Hb_002835_320 Hb_002571_020 Hb_002571_020 Hb_009851_100--Hb_002571_020 Hb_009851_100--Hb_001045_080 Hb_009851_100--Hb_002835_320 Hb_009851_100--Hb_001269_270 Hb_005463_060 Hb_005463_060 Hb_003988_040--Hb_005463_060 Hb_003607_170 Hb_003607_170 Hb_003988_040--Hb_003607_170 Hb_003988_040--Hb_000159_070 Hb_000134_020 Hb_000134_020 Hb_003988_040--Hb_000134_020 Hb_003988_040--Hb_000312_090 Hb_009384_020 Hb_009384_020 Hb_000159_070--Hb_009384_020 Hb_076693_040 Hb_076693_040 Hb_000159_070--Hb_076693_040 Hb_019516_100 Hb_019516_100 Hb_000159_070--Hb_019516_100 Hb_000172_420 Hb_000172_420 Hb_000159_070--Hb_000172_420 Hb_000617_090--Hb_001269_270 Hb_003226_210 Hb_003226_210 Hb_000617_090--Hb_003226_210 Hb_026398_010 Hb_026398_010 Hb_000617_090--Hb_026398_010 Hb_000617_090--Hb_001221_310 Hb_000617_090--Hb_003125_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
104.592 7.26572 36.7704 56.7278 74.9991 110.664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
252.959 370.953 71.7379 46.7606 32.299

CAGE analysis