Hb_076693_040

Information

Type -
Description -
Location Contig76693: 29674-33518
Sequence    

Annotation

kegg
ID cic:CICLE_v10033216mg
description hypothetical protein
nr
ID XP_010545018.1
description PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
swissprot
ID Q9LZI6
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B OS=Arabidopsis thaliana GN=At3g62790 PE=3 SV=1
trembl
ID A0A0D2R1A6
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G089700 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57445: 30622-33460
cDNA
(Sanger)
(ID:Location)		 046_M15.ab1: 30648-33460

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_076693_040 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
2 Hb_001304_140 0.0767453846 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
3 Hb_000159_070 0.0877256431 - - JHL03K20.4 [Jatropha curcas]
4 Hb_002391_220 0.1074250777 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
5 Hb_009384_020 0.1109579724 - - hypothetical protein JCGZ_24168 [Jatropha curcas]
6 Hb_000172_420 0.115920722 - - 60S ribosomal protein L30, putative [Ricinus communis]
7 Hb_000270_720 0.1164072874 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
8 Hb_000062_390 0.1185353123 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
9 Hb_019516_100 0.1221883888 - - 40S ribosomal protein S14, putative [Ricinus communis]
10 Hb_000191_030 0.1228719447 - - hypothetical protein POPTR_0012s07830g [Populus trichocarpa]
11 Hb_000809_060 0.1233817304 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
12 Hb_007441_300 0.1269578418 - - ATP binding protein, putative [Ricinus communis]
13 Hb_008887_040 0.1269678086 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
14 Hb_000260_200 0.1300769599 - - -
15 Hb_004755_030 0.1315250355 - - EG964 [Manihot glaziovii]
16 Hb_001221_310 0.1322476709 - - sec61 gamma subunit, putative [Ricinus communis]
17 Hb_001424_020 0.1326618445 - - PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]
18 Hb_000453_090 0.1328736593 - - mitochondrial import inner membrane translocase subunit Tim9 [Jatropha curcas]
19 Hb_007885_010 0.1362358894 - - 60S ribosomal protein L24-1 isoform 1 [Theobroma cacao]
20 Hb_000599_280 0.1364417522 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]

Gene co-expression network

sample Hb_076693_040 Hb_076693_040 Hb_001304_140 Hb_001304_140 Hb_076693_040--Hb_001304_140 Hb_000159_070 Hb_000159_070 Hb_076693_040--Hb_000159_070 Hb_002391_220 Hb_002391_220 Hb_076693_040--Hb_002391_220 Hb_009384_020 Hb_009384_020 Hb_076693_040--Hb_009384_020 Hb_000172_420 Hb_000172_420 Hb_076693_040--Hb_000172_420 Hb_000270_720 Hb_000270_720 Hb_076693_040--Hb_000270_720 Hb_001304_140--Hb_002391_220 Hb_010582_010 Hb_010582_010 Hb_001304_140--Hb_010582_010 Hb_054074_010 Hb_054074_010 Hb_001304_140--Hb_054074_010 Hb_001424_020 Hb_001424_020 Hb_001304_140--Hb_001424_020 Hb_001304_140--Hb_000159_070 Hb_000159_070--Hb_009384_020 Hb_003988_040 Hb_003988_040 Hb_000159_070--Hb_003988_040 Hb_019516_100 Hb_019516_100 Hb_000159_070--Hb_019516_100 Hb_000159_070--Hb_000172_420 Hb_002897_080 Hb_002897_080 Hb_000159_070--Hb_002897_080 Hb_000260_200 Hb_000260_200 Hb_002391_220--Hb_000260_200 Hb_000069_140 Hb_000069_140 Hb_002391_220--Hb_000069_140 Hb_000445_490 Hb_000445_490 Hb_002391_220--Hb_000445_490 Hb_002391_220--Hb_000270_720 Hb_000599_280 Hb_000599_280 Hb_002391_220--Hb_000599_280 Hb_009384_020--Hb_019516_100 Hb_007944_040 Hb_007944_040 Hb_009384_020--Hb_007944_040 Hb_001158_230 Hb_001158_230 Hb_009384_020--Hb_001158_230 Hb_012753_230 Hb_012753_230 Hb_009384_020--Hb_012753_230 Hb_000042_260 Hb_000042_260 Hb_009384_020--Hb_000042_260 Hb_002248_100 Hb_002248_100 Hb_000172_420--Hb_002248_100 Hb_006588_080 Hb_006588_080 Hb_000172_420--Hb_006588_080 Hb_000062_390 Hb_000062_390 Hb_000172_420--Hb_000062_390 Hb_000635_080 Hb_000635_080 Hb_000172_420--Hb_000635_080 Hb_000172_420--Hb_000270_720 Hb_008948_050 Hb_008948_050 Hb_000172_420--Hb_008948_050 Hb_000789_110 Hb_000789_110 Hb_000270_720--Hb_000789_110 Hb_002316_120 Hb_002316_120 Hb_000270_720--Hb_002316_120 Hb_004007_180 Hb_004007_180 Hb_000270_720--Hb_004007_180 Hb_000270_720--Hb_000599_280 Hb_000820_130 Hb_000820_130 Hb_000270_720--Hb_000820_130 Hb_004755_030 Hb_004755_030 Hb_000270_720--Hb_004755_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5429 2.75572 24.6447 13.5851 12.1838 14.5493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
73.5209 91.1658 22.6232 9.96002 10.8763

CAGE analysis