Hb_010582_010

Information

Type -
Description -
Location Contig10582: 12018-13493
Sequence    

Annotation

kegg
ID pop:POPTR_0011s15670g
description POPTRDRAFT_569288; hypothetical protein
nr
ID XP_002317061.1
description hypothetical protein POPTR_0011s15670g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9I0T6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s15670g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01910: 11949-13810 , PASA_asmbl_01911: 12137-12559
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010582_010 0.0 - - hypothetical protein POPTR_0011s15670g [Populus trichocarpa]
2 Hb_001304_140 0.0967265268 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
3 Hb_000365_080 0.1029457675 - - PREDICTED: uncharacterized protein LOC105649037 [Jatropha curcas]
4 Hb_054074_010 0.1050630724 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
5 Hb_005211_190 0.1084452217 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
6 Hb_002609_210 0.1144424162 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
7 Hb_001424_020 0.1149464514 - - PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]
8 Hb_007416_020 0.116934645 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
9 Hb_023386_010 0.1207934282 - - PREDICTED: histidine triad nucleotide-binding protein 3 [Jatropha curcas]
10 Hb_002391_220 0.1214333197 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
11 Hb_029584_060 0.1220665634 - - Grave disease carrier protein, putative [Ricinus communis]
12 Hb_000027_150 0.1297843675 - - mitochondrial carrier protein, putative [Ricinus communis]
13 Hb_003777_210 0.1302891173 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
14 Hb_001604_030 0.1309490776 - - ubiquitin-conjugating enzyme E2 35-like [Cucumis sativus]
15 Hb_003349_080 0.1309975182 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
16 Hb_000320_180 0.1344760346 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
17 Hb_028487_030 0.1373811616 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000221_150 0.1379993883 - - -
19 Hb_076693_040 0.138450322 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
20 Hb_000042_200 0.1387448379 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_010582_010 Hb_010582_010 Hb_001304_140 Hb_001304_140 Hb_010582_010--Hb_001304_140 Hb_000365_080 Hb_000365_080 Hb_010582_010--Hb_000365_080 Hb_054074_010 Hb_054074_010 Hb_010582_010--Hb_054074_010 Hb_005211_190 Hb_005211_190 Hb_010582_010--Hb_005211_190 Hb_002609_210 Hb_002609_210 Hb_010582_010--Hb_002609_210 Hb_001424_020 Hb_001424_020 Hb_010582_010--Hb_001424_020 Hb_076693_040 Hb_076693_040 Hb_001304_140--Hb_076693_040 Hb_002391_220 Hb_002391_220 Hb_001304_140--Hb_002391_220 Hb_001304_140--Hb_054074_010 Hb_001304_140--Hb_001424_020 Hb_000159_070 Hb_000159_070 Hb_001304_140--Hb_000159_070 Hb_000365_080--Hb_005211_190 Hb_007304_070 Hb_007304_070 Hb_000365_080--Hb_007304_070 Hb_007416_020 Hb_007416_020 Hb_000365_080--Hb_007416_020 Hb_007575_070 Hb_007575_070 Hb_000365_080--Hb_007575_070 Hb_000365_080--Hb_001424_020 Hb_002107_120 Hb_002107_120 Hb_000365_080--Hb_002107_120 Hb_023386_010 Hb_023386_010 Hb_054074_010--Hb_023386_010 Hb_000820_130 Hb_000820_130 Hb_054074_010--Hb_000820_130 Hb_008699_020 Hb_008699_020 Hb_054074_010--Hb_008699_020 Hb_001604_030 Hb_001604_030 Hb_054074_010--Hb_001604_030 Hb_005211_190--Hb_002609_210 Hb_005211_190--Hb_001424_020 Hb_005211_190--Hb_002107_120 Hb_009421_040 Hb_009421_040 Hb_005211_190--Hb_009421_040 Hb_000680_140 Hb_000680_140 Hb_005211_190--Hb_000680_140 Hb_009711_020 Hb_009711_020 Hb_002609_210--Hb_009711_020 Hb_000030_290 Hb_000030_290 Hb_002609_210--Hb_000030_290 Hb_002609_210--Hb_009421_040 Hb_002609_210--Hb_000680_140 Hb_000334_210 Hb_000334_210 Hb_002609_210--Hb_000334_210 Hb_000260_200 Hb_000260_200 Hb_001424_020--Hb_000260_200 Hb_002687_170 Hb_002687_170 Hb_001424_020--Hb_002687_170 Hb_000069_140 Hb_000069_140 Hb_001424_020--Hb_000069_140 Hb_000083_090 Hb_000083_090 Hb_001424_020--Hb_000083_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8596 5.01084 8.88959 11.1847 6.25521 13.7395
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.2079 47.0581 20.0065 4.35737 12.6709

CAGE analysis