Hb_000083_090

Information

Type -
Description -
Location Contig83: 189491-192410
Sequence    

Annotation

kegg
ID rcu:RCOM_0884730
description immunophilin, putative (EC:5.2.1.8)
nr
ID XP_002522624.1
description immunophilin, putative [Ricinus communis]
swissprot
ID O04287
description Peptidyl-prolyl cis-trans isomerase FKBP12 OS=Vicia faba GN=FKBP12 PE=1 SV=1
trembl
ID B9S9F5
description Peptidyl-prolyl cis-trans isomerase OS=Ricinus communis GN=RCOM_0884730 PE=4 SV=1
Gene Ontology
ID GO:0005829
description peptidyl-prolyl cis-trans isomerase fkbp12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59775: 189383-192436 , PASA_asmbl_59776: 191063-191281 , PASA_asmbl_59777: 191703-192000
cDNA
(Sanger)
(ID:Location)		 001_M12.ab1: 189478-192280 , 010_C14.ab1: 189473-192091 , 015_N10.ab1: 189470-192418 , 026_O18.ab1: 189435-192367 , 033_A10.ab1: 189470-192285 , 041_C06.ab1: 189435-192276 , 048_P19.ab1: 189483-192436 , 049_O06.ab1: 189487-192418 , 053_F06.ab1: 189383-192368

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000083_090 0.0 - - immunophilin, putative [Ricinus communis]
2 Hb_000163_210 0.0666291763 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
3 Hb_000260_200 0.0930034596 - - -
4 Hb_001424_020 0.0934052237 - - PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]
5 Hb_000389_080 0.0937303983 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
6 Hb_000193_120 0.0963240006 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
7 Hb_004156_040 0.09715376 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
8 Hb_000181_300 0.0980745727 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
9 Hb_000012_100 0.0988717337 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
10 Hb_002107_120 0.0990180296 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
11 Hb_005211_190 0.1005882906 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
12 Hb_003349_080 0.1073152059 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
13 Hb_001076_020 0.1075903871 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
14 Hb_003053_030 0.1089756326 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
15 Hb_026048_070 0.1097852362 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
16 Hb_000224_140 0.1101001363 - - ribonuclease z, chloroplast, putative [Ricinus communis]
17 Hb_012539_020 0.110690243 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
18 Hb_000364_030 0.1117246589 - - RNA binding protein, putative [Ricinus communis]
19 Hb_000069_140 0.1121234425 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
20 Hb_000061_130 0.1125513943 - - rotamase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000083_090 Hb_000083_090 Hb_000163_210 Hb_000163_210 Hb_000083_090--Hb_000163_210 Hb_000260_200 Hb_000260_200 Hb_000083_090--Hb_000260_200 Hb_001424_020 Hb_001424_020 Hb_000083_090--Hb_001424_020 Hb_000389_080 Hb_000389_080 Hb_000083_090--Hb_000389_080 Hb_000193_120 Hb_000193_120 Hb_000083_090--Hb_000193_120 Hb_004156_040 Hb_004156_040 Hb_000083_090--Hb_004156_040 Hb_000163_210--Hb_000260_200 Hb_012539_020 Hb_012539_020 Hb_000163_210--Hb_012539_020 Hb_000163_210--Hb_000389_080 Hb_005000_180 Hb_005000_180 Hb_000163_210--Hb_005000_180 Hb_000069_140 Hb_000069_140 Hb_000163_210--Hb_000069_140 Hb_002391_220 Hb_002391_220 Hb_000260_200--Hb_002391_220 Hb_000260_200--Hb_000069_140 Hb_000260_200--Hb_001424_020 Hb_001785_040 Hb_001785_040 Hb_000260_200--Hb_001785_040 Hb_000260_200--Hb_012539_020 Hb_005211_190 Hb_005211_190 Hb_001424_020--Hb_005211_190 Hb_000365_080 Hb_000365_080 Hb_001424_020--Hb_000365_080 Hb_002687_170 Hb_002687_170 Hb_001424_020--Hb_002687_170 Hb_001424_020--Hb_000069_140 Hb_000389_080--Hb_012539_020 Hb_001780_050 Hb_001780_050 Hb_000389_080--Hb_001780_050 Hb_000163_130 Hb_000163_130 Hb_000389_080--Hb_000163_130 Hb_000905_180 Hb_000905_180 Hb_000389_080--Hb_000905_180 Hb_001155_040 Hb_001155_040 Hb_000389_080--Hb_001155_040 Hb_003053_030 Hb_003053_030 Hb_000389_080--Hb_003053_030 Hb_000181_300 Hb_000181_300 Hb_000193_120--Hb_000181_300 Hb_000103_010 Hb_000103_010 Hb_000193_120--Hb_000103_010 Hb_000012_100 Hb_000012_100 Hb_000193_120--Hb_000012_100 Hb_000193_120--Hb_004156_040 Hb_001634_040 Hb_001634_040 Hb_000193_120--Hb_001634_040 Hb_001016_090 Hb_001016_090 Hb_000193_120--Hb_001016_090 Hb_148200_010 Hb_148200_010 Hb_004156_040--Hb_148200_010 Hb_004156_040--Hb_003053_030 Hb_004156_040--Hb_000012_100 Hb_001191_090 Hb_001191_090 Hb_004156_040--Hb_001191_090 Hb_004156_040--Hb_000181_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
124.816 56.5364 104.254 97.0911 97.8879 106.505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
652.935 661.074 378.786 198.488 161.518

CAGE analysis