Hb_005211_190

Information

Type -
Description -
Location Contig5211: 166416-168346
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11660g
description POPTRDRAFT_656784; hypothetical protein
nr
ID XP_012082049.1
description PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
swissprot
ID Q31QE7
description ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942) GN=clpS PE=3 SV=1
trembl
ID A0A067JZH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18297 PE=3 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein l12 atp-dependent clp protease adaptor protein family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46772: 166341-168333
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005211_190 0.0 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
2 Hb_000365_080 0.0722874015 - - PREDICTED: uncharacterized protein LOC105649037 [Jatropha curcas]
3 Hb_002609_210 0.0777940881 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
4 Hb_001424_020 0.0819956296 - - PREDICTED: AP-1 complex subunit sigma-2 isoform X2 [Solanum lycopersicum]
5 Hb_002107_120 0.0828118044 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
6 Hb_009421_040 0.084921289 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
7 Hb_000680_140 0.0853327642 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
8 Hb_007304_070 0.0864619737 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
9 Hb_007416_020 0.0876969155 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
10 Hb_000111_340 0.0878907751 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
11 Hb_000334_210 0.0924024292 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
12 Hb_009711_020 0.0947009153 - - PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
13 Hb_000483_250 0.0951313743 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
14 Hb_029584_060 0.0951757369 - - Grave disease carrier protein, putative [Ricinus communis]
15 Hb_000364_030 0.095341804 - - RNA binding protein, putative [Ricinus communis]
16 Hb_002687_170 0.0971070166 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
17 Hb_002431_050 0.0974795314 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
18 Hb_003053_030 0.0975127705 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
19 Hb_000083_090 0.1005882906 - - immunophilin, putative [Ricinus communis]
20 Hb_004459_040 0.1008633882 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]

Gene co-expression network

sample Hb_005211_190 Hb_005211_190 Hb_000365_080 Hb_000365_080 Hb_005211_190--Hb_000365_080 Hb_002609_210 Hb_002609_210 Hb_005211_190--Hb_002609_210 Hb_001424_020 Hb_001424_020 Hb_005211_190--Hb_001424_020 Hb_002107_120 Hb_002107_120 Hb_005211_190--Hb_002107_120 Hb_009421_040 Hb_009421_040 Hb_005211_190--Hb_009421_040 Hb_000680_140 Hb_000680_140 Hb_005211_190--Hb_000680_140 Hb_007304_070 Hb_007304_070 Hb_000365_080--Hb_007304_070 Hb_007416_020 Hb_007416_020 Hb_000365_080--Hb_007416_020 Hb_007575_070 Hb_007575_070 Hb_000365_080--Hb_007575_070 Hb_000365_080--Hb_001424_020 Hb_000365_080--Hb_002107_120 Hb_009711_020 Hb_009711_020 Hb_002609_210--Hb_009711_020 Hb_000030_290 Hb_000030_290 Hb_002609_210--Hb_000030_290 Hb_002609_210--Hb_009421_040 Hb_002609_210--Hb_000680_140 Hb_000334_210 Hb_000334_210 Hb_002609_210--Hb_000334_210 Hb_000260_200 Hb_000260_200 Hb_001424_020--Hb_000260_200 Hb_002687_170 Hb_002687_170 Hb_001424_020--Hb_002687_170 Hb_000069_140 Hb_000069_140 Hb_001424_020--Hb_000069_140 Hb_000083_090 Hb_000083_090 Hb_001424_020--Hb_000083_090 Hb_003053_030 Hb_003053_030 Hb_002107_120--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_002107_120--Hb_148200_010 Hb_000193_200 Hb_000193_200 Hb_002107_120--Hb_000193_200 Hb_003376_130 Hb_003376_130 Hb_002107_120--Hb_003376_130 Hb_001268_140 Hb_001268_140 Hb_002107_120--Hb_001268_140 Hb_005357_130 Hb_005357_130 Hb_009421_040--Hb_005357_130 Hb_009421_040--Hb_002687_170 Hb_000086_550 Hb_000086_550 Hb_009421_040--Hb_000086_550 Hb_001117_090 Hb_001117_090 Hb_009421_040--Hb_001117_090 Hb_003623_050 Hb_003623_050 Hb_009421_040--Hb_003623_050 Hb_004459_040 Hb_004459_040 Hb_000680_140--Hb_004459_040 Hb_153112_030 Hb_153112_030 Hb_000680_140--Hb_153112_030 Hb_007576_170 Hb_007576_170 Hb_000680_140--Hb_007576_170 Hb_006541_010 Hb_006541_010 Hb_000680_140--Hb_006541_010 Hb_001616_040 Hb_001616_040 Hb_000680_140--Hb_001616_040 Hb_000668_040 Hb_000668_040 Hb_000680_140--Hb_000668_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.5976 23.9479 20.564 27.4928 34.3389 41.5571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
148.12 156.609 65.638 32.401 42.9536

CAGE analysis