Hb_004755_030

Information

Type -
Description -
Location Contig4755: 19456-21144
Sequence    

Annotation

kegg
ID rcu:RCOM_1590640
description sterol carrier, putative
nr
ID AGT97331.1
description EG964 [Manihot glaziovii]
swissprot
ID P97852
description Peroxisomal multifunctional enzyme type 2 OS=Rattus norvegicus GN=Hsd17b4 PE=1 SV=3
trembl
ID U3GMZ5
description EG964 OS=Manihot glaziovii GN=EG964 PE=2 SV=1
Gene Ontology
ID GO:0005777
description eg964

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44493: 19519-21310 , PASA_asmbl_44494: 19723-20450
cDNA
(Sanger)
(ID:Location)		 001_O05.ab1: 19616-21146 , 003_B16.ab1: 19519-21260 , 003_C16.ab1: 19638-21260 , 010_P15.ab1: 19616-21257 , 012_G12.ab1: 19545-21260 , 014_I06.ab1: 19519-21260 , 017_F09.ab1: 19545-21260 , 019_K11.ab1: 19519-21260 , 021_O13.ab1: 19545-21260 , 046_F17.ab1: 19723-20450

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004755_030 0.0 - - EG964 [Manihot glaziovii]
2 Hb_000270_720 0.0826004775 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
3 Hb_000789_110 0.0944175773 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
4 Hb_008887_040 0.1129831001 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
5 Hb_004007_180 0.1133820436 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
6 Hb_002316_120 0.1135876375 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
7 Hb_000975_180 0.1204896869 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
8 Hb_000172_420 0.1213159775 - - 60S ribosomal protein L30, putative [Ricinus communis]
9 Hb_021924_010 0.121689447 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
10 Hb_000809_060 0.1218385969 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
11 Hb_000853_240 0.1275784406 - - -
12 Hb_000454_180 0.129821066 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
13 Hb_000159_070 0.1314986673 - - JHL03K20.4 [Jatropha curcas]
14 Hb_076693_040 0.1315250355 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
15 Hb_000599_280 0.1326498948 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
16 Hb_006588_080 0.1346245629 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
17 Hb_004735_050 0.1349696463 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
18 Hb_007885_010 0.1395115085 - - 60S ribosomal protein L24-1 isoform 1 [Theobroma cacao]
19 Hb_000820_130 0.1403980568 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
20 Hb_000300_390 0.140879698 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]

Gene co-expression network

sample Hb_004755_030 Hb_004755_030 Hb_000270_720 Hb_000270_720 Hb_004755_030--Hb_000270_720 Hb_000789_110 Hb_000789_110 Hb_004755_030--Hb_000789_110 Hb_008887_040 Hb_008887_040 Hb_004755_030--Hb_008887_040 Hb_004007_180 Hb_004007_180 Hb_004755_030--Hb_004007_180 Hb_002316_120 Hb_002316_120 Hb_004755_030--Hb_002316_120 Hb_000975_180 Hb_000975_180 Hb_004755_030--Hb_000975_180 Hb_000270_720--Hb_000789_110 Hb_000270_720--Hb_002316_120 Hb_000270_720--Hb_004007_180 Hb_000599_280 Hb_000599_280 Hb_000270_720--Hb_000599_280 Hb_000820_130 Hb_000820_130 Hb_000270_720--Hb_000820_130 Hb_000789_110--Hb_002316_120 Hb_000300_390 Hb_000300_390 Hb_000789_110--Hb_000300_390 Hb_000789_110--Hb_000820_130 Hb_001377_380 Hb_001377_380 Hb_000789_110--Hb_001377_380 Hb_000789_110--Hb_004007_180 Hb_008887_040--Hb_000270_720 Hb_008887_040--Hb_000789_110 Hb_000159_070 Hb_000159_070 Hb_008887_040--Hb_000159_070 Hb_168711_010 Hb_168711_010 Hb_008887_040--Hb_168711_010 Hb_002260_020 Hb_002260_020 Hb_008887_040--Hb_002260_020 Hb_004007_180--Hb_002316_120 Hb_004007_180--Hb_000599_280 Hb_006588_080 Hb_006588_080 Hb_004007_180--Hb_006588_080 Hb_004735_050 Hb_004735_050 Hb_004007_180--Hb_004735_050 Hb_002316_120--Hb_000300_390 Hb_002316_120--Hb_001377_380 Hb_012539_020 Hb_012539_020 Hb_002316_120--Hb_012539_020 Hb_021924_010 Hb_021924_010 Hb_000975_180--Hb_021924_010 Hb_001488_400 Hb_001488_400 Hb_000975_180--Hb_001488_400 Hb_000130_100 Hb_000130_100 Hb_000975_180--Hb_000130_100 Hb_000975_180--Hb_000270_720 Hb_000975_180--Hb_000789_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
123.083 17.9459 120.439 218.593 55.0775 122.42
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
693.778 1069.33 231.159 58.2049 53.0955

CAGE analysis