Hb_021924_010

Information

Type -
Description -
Location Contig21924: 804-3530
Sequence    

Annotation

kegg
ID cic:CICLE_v10011083mg
description hypothetical protein
nr
ID KDO43933.1
description hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
swissprot
ID Q8L850
description Phosphatidylinositol 4-phosphate 5-kinase 9 OS=Arabidopsis thaliana GN=PIP5K9 PE=1 SV=2
trembl
ID M0XTI7
description Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1
Gene Ontology
ID GO:0005634
description phosphatidyl inositol monophosphate 5 kinase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22572: 1250-2642
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021924_010 0.0 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
2 Hb_000975_180 0.0895838214 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
3 Hb_001488_400 0.1005433232 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
4 Hb_023732_060 0.1121271716 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
5 Hb_004755_030 0.121689447 - - EG964 [Manihot glaziovii]
6 Hb_003226_220 0.1278952066 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
7 Hb_003988_040 0.1313017043 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
8 Hb_000270_720 0.1363550949 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
9 Hb_009659_010 0.137377276 - - PREDICTED: mediator of RNA polymerase II transcription subunit 9 [Vitis vinifera]
10 Hb_000789_110 0.1379563457 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
11 Hb_004007_180 0.1390712878 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
12 Hb_124055_010 0.1393386649 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
13 Hb_009659_020 0.1421177137 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
14 Hb_005463_060 0.1427047753 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
15 Hb_014834_030 0.1450456227 - - -
16 Hb_000367_210 0.1464139675 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
17 Hb_000181_380 0.1467210325 - - PREDICTED: cytochrome c oxidase copper chaperone 1 [Jatropha curcas]
18 Hb_002316_120 0.1473586382 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
19 Hb_000820_130 0.1483800738 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
20 Hb_005245_070 0.1486665926 - - PREDICTED: uncharacterized protein LOC105643658 [Jatropha curcas]

Gene co-expression network

sample Hb_021924_010 Hb_021924_010 Hb_000975_180 Hb_000975_180 Hb_021924_010--Hb_000975_180 Hb_001488_400 Hb_001488_400 Hb_021924_010--Hb_001488_400 Hb_023732_060 Hb_023732_060 Hb_021924_010--Hb_023732_060 Hb_004755_030 Hb_004755_030 Hb_021924_010--Hb_004755_030 Hb_003226_220 Hb_003226_220 Hb_021924_010--Hb_003226_220 Hb_003988_040 Hb_003988_040 Hb_021924_010--Hb_003988_040 Hb_000975_180--Hb_001488_400 Hb_000130_100 Hb_000130_100 Hb_000975_180--Hb_000130_100 Hb_000270_720 Hb_000270_720 Hb_000975_180--Hb_000270_720 Hb_000975_180--Hb_004755_030 Hb_000789_110 Hb_000789_110 Hb_000975_180--Hb_000789_110 Hb_001488_400--Hb_003226_220 Hb_000272_050 Hb_000272_050 Hb_001488_400--Hb_000272_050 Hb_000212_210 Hb_000212_210 Hb_001488_400--Hb_000212_210 Hb_124055_010 Hb_124055_010 Hb_001488_400--Hb_124055_010 Hb_000656_340 Hb_000656_340 Hb_023732_060--Hb_000656_340 Hb_023732_060--Hb_003226_220 Hb_023732_060--Hb_000975_180 Hb_023732_060--Hb_003988_040 Hb_023386_010 Hb_023386_010 Hb_023732_060--Hb_023386_010 Hb_004755_030--Hb_000270_720 Hb_004755_030--Hb_000789_110 Hb_008887_040 Hb_008887_040 Hb_004755_030--Hb_008887_040 Hb_004007_180 Hb_004007_180 Hb_004755_030--Hb_004007_180 Hb_002316_120 Hb_002316_120 Hb_004755_030--Hb_002316_120 Hb_000212_470 Hb_000212_470 Hb_003226_220--Hb_000212_470 Hb_001571_090 Hb_001571_090 Hb_003226_220--Hb_001571_090 Hb_003226_220--Hb_000272_050 Hb_003226_220--Hb_003988_040 Hb_001575_030 Hb_001575_030 Hb_003226_220--Hb_001575_030 Hb_005463_060 Hb_005463_060 Hb_003226_220--Hb_005463_060 Hb_003988_040--Hb_005463_060 Hb_003607_170 Hb_003607_170 Hb_003988_040--Hb_003607_170 Hb_000159_070 Hb_000159_070 Hb_003988_040--Hb_000159_070 Hb_002897_080 Hb_002897_080 Hb_003988_040--Hb_002897_080 Hb_000134_020 Hb_000134_020 Hb_003988_040--Hb_000134_020 Hb_000312_090 Hb_000312_090 Hb_003988_040--Hb_000312_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.16757 0.492897 0.590061 2.98738 0.326944 1.85188
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.64348 8.71265 1.47346 0.653404 0.269772

CAGE analysis