Hb_023732_060

Information

Type -
Description -
Location Contig23732: 67929-70906
Sequence    

Annotation

kegg
ID cam:101509061
description uncharacterized LOC101509061
nr
ID XP_012076446.1
description PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KBL1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07098 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24819: 67788-69232 , PASA_asmbl_24820: 67875-69237
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023732_060 0.0 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
2 Hb_000656_340 0.0972269958 - - hypothetical protein JCGZ_24686 [Jatropha curcas]
3 Hb_021924_010 0.1121271716 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
4 Hb_003226_220 0.1180142085 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
5 Hb_000975_180 0.1366744015 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
6 Hb_003988_040 0.137276233 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
7 Hb_023386_010 0.1394759785 - - PREDICTED: histidine triad nucleotide-binding protein 3 [Jatropha curcas]
8 Hb_140543_010 0.1407094883 - - -
9 Hb_000212_470 0.1411777366 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]
10 Hb_005463_060 0.145360676 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
11 Hb_001085_010 0.1455634855 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Populus euphratica]
12 Hb_130235_010 0.1464787186 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
13 Hb_003607_170 0.1502472616 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
14 Hb_004421_020 0.1504113769 - - -
15 Hb_001488_400 0.150543108 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
16 Hb_008699_020 0.1515807191 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
17 Hb_000275_130 0.1522939344 - - hypothetical protein CICLE_v10003066mg [Citrus clementina]
18 Hb_009659_020 0.1529165932 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
19 Hb_000820_130 0.1529755419 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
20 Hb_001754_070 0.155282923 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]

Gene co-expression network

sample Hb_023732_060 Hb_023732_060 Hb_000656_340 Hb_000656_340 Hb_023732_060--Hb_000656_340 Hb_021924_010 Hb_021924_010 Hb_023732_060--Hb_021924_010 Hb_003226_220 Hb_003226_220 Hb_023732_060--Hb_003226_220 Hb_000975_180 Hb_000975_180 Hb_023732_060--Hb_000975_180 Hb_003988_040 Hb_003988_040 Hb_023732_060--Hb_003988_040 Hb_023386_010 Hb_023386_010 Hb_023732_060--Hb_023386_010 Hb_140543_010 Hb_140543_010 Hb_000656_340--Hb_140543_010 Hb_006995_040 Hb_006995_040 Hb_000656_340--Hb_006995_040 Hb_020035_020 Hb_020035_020 Hb_000656_340--Hb_020035_020 Hb_130235_010 Hb_130235_010 Hb_000656_340--Hb_130235_010 Hb_000419_130 Hb_000419_130 Hb_000656_340--Hb_000419_130 Hb_021924_010--Hb_000975_180 Hb_001488_400 Hb_001488_400 Hb_021924_010--Hb_001488_400 Hb_004755_030 Hb_004755_030 Hb_021924_010--Hb_004755_030 Hb_021924_010--Hb_003226_220 Hb_021924_010--Hb_003988_040 Hb_000212_470 Hb_000212_470 Hb_003226_220--Hb_000212_470 Hb_001571_090 Hb_001571_090 Hb_003226_220--Hb_001571_090 Hb_000272_050 Hb_000272_050 Hb_003226_220--Hb_000272_050 Hb_003226_220--Hb_003988_040 Hb_001575_030 Hb_001575_030 Hb_003226_220--Hb_001575_030 Hb_005463_060 Hb_005463_060 Hb_003226_220--Hb_005463_060 Hb_000975_180--Hb_001488_400 Hb_000130_100 Hb_000130_100 Hb_000975_180--Hb_000130_100 Hb_000270_720 Hb_000270_720 Hb_000975_180--Hb_000270_720 Hb_000975_180--Hb_004755_030 Hb_000789_110 Hb_000789_110 Hb_000975_180--Hb_000789_110 Hb_003988_040--Hb_005463_060 Hb_003607_170 Hb_003607_170 Hb_003988_040--Hb_003607_170 Hb_000159_070 Hb_000159_070 Hb_003988_040--Hb_000159_070 Hb_002897_080 Hb_002897_080 Hb_003988_040--Hb_002897_080 Hb_000134_020 Hb_000134_020 Hb_003988_040--Hb_000134_020 Hb_000312_090 Hb_000312_090 Hb_003988_040--Hb_000312_090 Hb_054074_010 Hb_054074_010 Hb_023386_010--Hb_054074_010 Hb_001604_030 Hb_001604_030 Hb_023386_010--Hb_001604_030 Hb_000820_130 Hb_000820_130 Hb_023386_010--Hb_000820_130 Hb_001304_140 Hb_001304_140 Hb_023386_010--Hb_001304_140 Hb_023386_010--Hb_000789_110 Hb_004994_260 Hb_004994_260 Hb_023386_010--Hb_004994_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.52997 2.16289 1.56045 7.37305 1.63374 6.81981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8735 16.4467 3.10568 2.59759 0.618771

CAGE analysis