Hb_140543_010

Information

Type -
Description -
Location Contig140543: 617-1446
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10992: 1152-1445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140543_010 0.0 - - -
2 Hb_001754_070 0.0777165022 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
3 Hb_172706_030 0.0784391894 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
4 Hb_130235_010 0.1007070939 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
5 Hb_000656_340 0.1037488768 - - hypothetical protein JCGZ_24686 [Jatropha curcas]
6 Hb_000086_550 0.1047114494 - - Os02g0814700 [Oryza sativa Japonica Group]
7 Hb_005357_130 0.1072707364 - - hypothetical protein L484_012905 [Morus notabilis]
8 Hb_000045_250 0.1160865591 - - PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
9 Hb_004502_020 0.1179313149 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
10 Hb_014834_030 0.118163922 - - -
11 Hb_000003_730 0.1192381593 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
12 Hb_007735_030 0.1194504853 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
13 Hb_000326_090 0.1206919869 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
14 Hb_003018_050 0.120841359 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
15 Hb_005667_040 0.1215890047 - - PREDICTED: trafficking protein particle complex subunit 5 [Jatropha curcas]
16 Hb_000364_020 0.1220448987 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
17 Hb_011161_050 0.1221682029 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
18 Hb_000419_130 0.1237179457 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
19 Hb_002296_040 0.1246798467 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
20 Hb_000505_140 0.1248893534 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]

Gene co-expression network

sample Hb_140543_010 Hb_140543_010 Hb_001754_070 Hb_001754_070 Hb_140543_010--Hb_001754_070 Hb_172706_030 Hb_172706_030 Hb_140543_010--Hb_172706_030 Hb_130235_010 Hb_130235_010 Hb_140543_010--Hb_130235_010 Hb_000656_340 Hb_000656_340 Hb_140543_010--Hb_000656_340 Hb_000086_550 Hb_000086_550 Hb_140543_010--Hb_000086_550 Hb_005357_130 Hb_005357_130 Hb_140543_010--Hb_005357_130 Hb_001754_070--Hb_130235_010 Hb_005667_040 Hb_005667_040 Hb_001754_070--Hb_005667_040 Hb_001158_150 Hb_001158_150 Hb_001754_070--Hb_001158_150 Hb_004125_110 Hb_004125_110 Hb_001754_070--Hb_004125_110 Hb_000326_090 Hb_000326_090 Hb_001754_070--Hb_000326_090 Hb_004336_050 Hb_004336_050 Hb_172706_030--Hb_004336_050 Hb_000672_120 Hb_000672_120 Hb_172706_030--Hb_000672_120 Hb_002878_010 Hb_002878_010 Hb_172706_030--Hb_002878_010 Hb_001504_080 Hb_001504_080 Hb_172706_030--Hb_001504_080 Hb_000364_020 Hb_000364_020 Hb_172706_030--Hb_000364_020 Hb_003018_050 Hb_003018_050 Hb_130235_010--Hb_003018_050 Hb_130235_010--Hb_004125_110 Hb_001054_100 Hb_001054_100 Hb_130235_010--Hb_001054_100 Hb_007735_030 Hb_007735_030 Hb_130235_010--Hb_007735_030 Hb_023732_060 Hb_023732_060 Hb_000656_340--Hb_023732_060 Hb_006995_040 Hb_006995_040 Hb_000656_340--Hb_006995_040 Hb_020035_020 Hb_020035_020 Hb_000656_340--Hb_020035_020 Hb_000656_340--Hb_130235_010 Hb_000419_130 Hb_000419_130 Hb_000656_340--Hb_000419_130 Hb_000086_550--Hb_005357_130 Hb_000340_140 Hb_000340_140 Hb_000086_550--Hb_000340_140 Hb_004032_100 Hb_004032_100 Hb_000086_550--Hb_004032_100 Hb_000086_550--Hb_000364_020 Hb_006816_530 Hb_006816_530 Hb_000086_550--Hb_006816_530 Hb_011161_050 Hb_011161_050 Hb_000086_550--Hb_011161_050 Hb_009421_040 Hb_009421_040 Hb_005357_130--Hb_009421_040 Hb_003623_050 Hb_003623_050 Hb_005357_130--Hb_003623_050 Hb_012022_120 Hb_012022_120 Hb_005357_130--Hb_012022_120 Hb_006541_010 Hb_006541_010 Hb_005357_130--Hb_006541_010 Hb_006816_210 Hb_006816_210 Hb_005357_130--Hb_006816_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.8367 6.26672 12.4729 53.1232 17.053 61.8156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.1472 108.103 26.1672 24.3756 17.6395

CAGE analysis