Hb_001575_030

Information

Type -
Description -
Location Contig1575: 39282-40130
Sequence    

Annotation

kegg
ID pop:POPTR_0022s00880g
description hypothetical protein
nr
ID XP_006389563.1
description hypothetical protein POPTR_0022s00880g [Populus trichocarpa]
swissprot
ID Q9SVZ6
description 60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana GN=RPP3A PE=3 SV=1
trembl
ID A9P8B5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0022s00880g PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s acidic ribosomal protein p3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13742: 39113-40217
cDNA
(Sanger)
(ID:Location)		 012_P20.ab1: 39188-40217

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001575_030 0.0 - - hypothetical protein POPTR_0022s00880g [Populus trichocarpa]
2 Hb_001610_130 0.0883785086 - - 40S ribosomal protein S30 [Medicago truncatula]
3 Hb_003226_220 0.1078854689 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
4 Hb_015978_070 0.1180047113 - - -
5 Hb_001571_090 0.1246024414 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
6 Hb_002232_470 0.1283706751 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000419_130 0.1352790043 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
8 Hb_000236_460 0.1385764149 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
9 Hb_003549_020 0.1391143116 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000645_190 0.1401247729 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
11 Hb_001769_100 0.1499797607 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
12 Hb_000212_470 0.1526916387 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]
13 Hb_003058_220 0.1538573429 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
14 Hb_129204_010 0.155573197 - - LOC100284182 [Zea mays]
15 Hb_000134_020 0.155691304 - - thioredoxin-like family protein [Hevea brasiliensis]
16 Hb_000345_430 0.1563374978 - - 40S ribosomal protein S24A [Hevea brasiliensis]
17 Hb_001488_400 0.1572238698 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
18 Hb_000613_170 0.1577503064 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
19 Hb_005463_060 0.1577689845 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
20 Hb_003607_170 0.1585708301 - - U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001575_030 Hb_001575_030 Hb_001610_130 Hb_001610_130 Hb_001575_030--Hb_001610_130 Hb_003226_220 Hb_003226_220 Hb_001575_030--Hb_003226_220 Hb_015978_070 Hb_015978_070 Hb_001575_030--Hb_015978_070 Hb_001571_090 Hb_001571_090 Hb_001575_030--Hb_001571_090 Hb_002232_470 Hb_002232_470 Hb_001575_030--Hb_002232_470 Hb_000419_130 Hb_000419_130 Hb_001575_030--Hb_000419_130 Hb_001610_130--Hb_000419_130 Hb_003058_220 Hb_003058_220 Hb_001610_130--Hb_003058_220 Hb_005224_050 Hb_005224_050 Hb_001610_130--Hb_005224_050 Hb_001610_130--Hb_003226_220 Hb_014834_140 Hb_014834_140 Hb_001610_130--Hb_014834_140 Hb_000212_470 Hb_000212_470 Hb_003226_220--Hb_000212_470 Hb_003226_220--Hb_001571_090 Hb_000272_050 Hb_000272_050 Hb_003226_220--Hb_000272_050 Hb_003988_040 Hb_003988_040 Hb_003226_220--Hb_003988_040 Hb_005463_060 Hb_005463_060 Hb_003226_220--Hb_005463_060 Hb_000367_170 Hb_000367_170 Hb_015978_070--Hb_000367_170 Hb_000345_430 Hb_000345_430 Hb_015978_070--Hb_000345_430 Hb_015978_070--Hb_001610_130 Hb_012305_120 Hb_012305_120 Hb_015978_070--Hb_012305_120 Hb_015978_070--Hb_000419_130 Hb_000661_240 Hb_000661_240 Hb_001571_090--Hb_000661_240 Hb_007290_080 Hb_007290_080 Hb_001571_090--Hb_007290_080 Hb_009554_010 Hb_009554_010 Hb_001571_090--Hb_009554_010 Hb_026398_010 Hb_026398_010 Hb_001571_090--Hb_026398_010 Hb_001769_100 Hb_001769_100 Hb_001571_090--Hb_001769_100 Hb_002232_470--Hb_003226_220 Hb_002232_470--Hb_000212_470 Hb_002232_470--Hb_001571_090 Hb_002232_470--Hb_001610_130 Hb_002232_470--Hb_005463_060 Hb_000419_130--Hb_001769_100 Hb_000419_130--Hb_003058_220 Hb_011161_050 Hb_011161_050 Hb_000419_130--Hb_011161_050 Hb_001085_010 Hb_001085_010 Hb_000419_130--Hb_001085_010 Hb_000199_070 Hb_000199_070 Hb_000419_130--Hb_000199_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
65.9406 10.2873 26.7296 95.5923 51.2723 237.697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
275.272 619 58.8189 93.8051 12.3549

CAGE analysis