Hb_000367_170

Information

Type -
Description -
Location Contig367: 155473-155763
Sequence    

Annotation

kegg
ID rcu:RCOM_1470530
description Protein C6orf149, putative
nr
ID XP_012080343.1
description PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
swissprot
ID B5FZA8
description LYR motif-containing protein 4 OS=Taeniopygia guttata GN=LYRM4 PE=3 SV=1
trembl
ID A0A067K5C2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11688 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37745: 156327-161753 , PASA_asmbl_37746: 156327-161636
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_170 0.0 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
2 Hb_015978_070 0.1152560483 - - -
3 Hb_001575_030 0.1689115529 - - hypothetical protein POPTR_0022s00880g [Populus trichocarpa]
4 Hb_001610_130 0.1791994687 - - 40S ribosomal protein S30 [Medicago truncatula]
5 Hb_011310_060 0.1861129292 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
6 Hb_001053_160 0.1882230228 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
7 Hb_000009_040 0.1885256956 - - -
8 Hb_000134_020 0.1896319661 - - thioredoxin-like family protein [Hevea brasiliensis]
9 Hb_001057_050 0.193613677 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
10 Hb_017711_010 0.1937550462 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
11 Hb_005224_050 0.1949601909 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
12 Hb_003058_220 0.1967348134 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
13 Hb_000645_190 0.1982391708 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
14 Hb_012305_120 0.1985420704 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
15 Hb_002293_030 0.2002654176 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
16 Hb_001587_060 0.2021053835 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000096_060 0.2038964745 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000847_140 0.2094001063 - - -
19 Hb_000345_430 0.2101753017 - - 40S ribosomal protein S24A [Hevea brasiliensis]
20 Hb_000419_130 0.2113255984 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]

Gene co-expression network

sample Hb_000367_170 Hb_000367_170 Hb_015978_070 Hb_015978_070 Hb_000367_170--Hb_015978_070 Hb_001575_030 Hb_001575_030 Hb_000367_170--Hb_001575_030 Hb_001610_130 Hb_001610_130 Hb_000367_170--Hb_001610_130 Hb_011310_060 Hb_011310_060 Hb_000367_170--Hb_011310_060 Hb_001053_160 Hb_001053_160 Hb_000367_170--Hb_001053_160 Hb_000009_040 Hb_000009_040 Hb_000367_170--Hb_000009_040 Hb_015978_070--Hb_001575_030 Hb_000345_430 Hb_000345_430 Hb_015978_070--Hb_000345_430 Hb_015978_070--Hb_001610_130 Hb_012305_120 Hb_012305_120 Hb_015978_070--Hb_012305_120 Hb_000419_130 Hb_000419_130 Hb_015978_070--Hb_000419_130 Hb_001575_030--Hb_001610_130 Hb_003226_220 Hb_003226_220 Hb_001575_030--Hb_003226_220 Hb_001571_090 Hb_001571_090 Hb_001575_030--Hb_001571_090 Hb_002232_470 Hb_002232_470 Hb_001575_030--Hb_002232_470 Hb_001575_030--Hb_000419_130 Hb_001610_130--Hb_000419_130 Hb_003058_220 Hb_003058_220 Hb_001610_130--Hb_003058_220 Hb_005224_050 Hb_005224_050 Hb_001610_130--Hb_005224_050 Hb_001610_130--Hb_003226_220 Hb_014834_140 Hb_014834_140 Hb_001610_130--Hb_014834_140 Hb_002293_030 Hb_002293_030 Hb_011310_060--Hb_002293_030 Hb_000134_020 Hb_000134_020 Hb_011310_060--Hb_000134_020 Hb_002234_210 Hb_002234_210 Hb_011310_060--Hb_002234_210 Hb_171900_050 Hb_171900_050 Hb_011310_060--Hb_171900_050 Hb_009252_130 Hb_009252_130 Hb_011310_060--Hb_009252_130 Hb_000190_060 Hb_000190_060 Hb_011310_060--Hb_000190_060 Hb_003638_080 Hb_003638_080 Hb_001053_160--Hb_003638_080 Hb_001053_160--Hb_005224_050 Hb_000487_320 Hb_000487_320 Hb_001053_160--Hb_000487_320 Hb_005496_030 Hb_005496_030 Hb_001053_160--Hb_005496_030 Hb_001053_160--Hb_000134_020 Hb_001053_160--Hb_003058_220 Hb_017711_010 Hb_017711_010 Hb_000009_040--Hb_017711_010 Hb_001587_060 Hb_001587_060 Hb_000009_040--Hb_001587_060 Hb_000236_460 Hb_000236_460 Hb_000009_040--Hb_000236_460 Hb_000009_040--Hb_003058_220 Hb_000009_040--Hb_005224_050 Hb_000009_040--Hb_002293_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.7335 13.4209 5.81546 12.8227 36.4082 224.593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
169.177 413.496 33.027 22.7209 4.35364

CAGE analysis