Hb_000190_060

Information

Type -
Description -
Location Contig190: 100507-103378
Sequence    

Annotation

kegg
ID cic:CICLE_v10033123mg
description hypothetical protein
nr
ID XP_012085513.1
description PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K359
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17838 PE=4 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein s21 family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18897: 100623-103384 , PASA_asmbl_18898: 100605-103384
cDNA
(Sanger)
(ID:Location)		 042_E03.ab1: 100623-103384

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000190_060 0.0 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
2 Hb_001214_030 0.0636018049 - - hypothetical protein POPTR_0006s10280g [Populus trichocarpa]
3 Hb_009252_130 0.0786793611 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
4 Hb_000417_110 0.081108274 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
5 Hb_000483_160 0.0846273 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
6 Hb_000025_530 0.0879496061 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
7 Hb_003058_070 0.0891549364 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
8 Hb_000061_480 0.0896133546 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
9 Hb_002234_210 0.0902709642 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
10 Hb_171900_050 0.0905398611 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003001_060 0.0908417093 - - wound-responsive family protein [Populus trichocarpa]
12 Hb_004899_220 0.0914621924 - - PREDICTED: adrenodoxin-like protein 2, mitochondrial [Jatropha curcas]
13 Hb_002477_240 0.0926170628 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
14 Hb_042202_010 0.098500404 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
15 Hb_005701_020 0.1003835344 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
16 Hb_010261_060 0.100797737 - - unnamed protein product [Coffea canephora]
17 Hb_001538_120 0.1008948264 - - PREDICTED: FAD-linked sulfhydryl oxidase ERV1 [Jatropha curcas]
18 Hb_000531_020 0.1010153827 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
19 Hb_002296_060 0.1033482028 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
20 Hb_001951_110 0.1045369992 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]

Gene co-expression network

sample Hb_000190_060 Hb_000190_060 Hb_001214_030 Hb_001214_030 Hb_000190_060--Hb_001214_030 Hb_009252_130 Hb_009252_130 Hb_000190_060--Hb_009252_130 Hb_000417_110 Hb_000417_110 Hb_000190_060--Hb_000417_110 Hb_000483_160 Hb_000483_160 Hb_000190_060--Hb_000483_160 Hb_000025_530 Hb_000025_530 Hb_000190_060--Hb_000025_530 Hb_003058_070 Hb_003058_070 Hb_000190_060--Hb_003058_070 Hb_042202_010 Hb_042202_010 Hb_001214_030--Hb_042202_010 Hb_002477_240 Hb_002477_240 Hb_001214_030--Hb_002477_240 Hb_001214_030--Hb_003058_070 Hb_001214_030--Hb_000417_110 Hb_003001_060 Hb_003001_060 Hb_001214_030--Hb_003001_060 Hb_000815_270 Hb_000815_270 Hb_009252_130--Hb_000815_270 Hb_001616_020 Hb_001616_020 Hb_009252_130--Hb_001616_020 Hb_000563_590 Hb_000563_590 Hb_009252_130--Hb_000563_590 Hb_000061_480 Hb_000061_480 Hb_009252_130--Hb_000061_480 Hb_001621_180 Hb_001621_180 Hb_009252_130--Hb_001621_180 Hb_000634_050 Hb_000634_050 Hb_000417_110--Hb_000634_050 Hb_001584_070 Hb_001584_070 Hb_000417_110--Hb_001584_070 Hb_001951_110 Hb_001951_110 Hb_000417_110--Hb_001951_110 Hb_000798_030 Hb_000798_030 Hb_000417_110--Hb_000798_030 Hb_000417_110--Hb_003058_070 Hb_000417_110--Hb_003001_060 Hb_004297_100 Hb_004297_100 Hb_000483_160--Hb_004297_100 Hb_000260_050 Hb_000260_050 Hb_000483_160--Hb_000260_050 Hb_001019_090 Hb_001019_090 Hb_000483_160--Hb_001019_090 Hb_000483_160--Hb_000417_110 Hb_000483_160--Hb_002477_240 Hb_004899_220 Hb_004899_220 Hb_000483_160--Hb_004899_220 Hb_000531_020 Hb_000531_020 Hb_000025_530--Hb_000531_020 Hb_000260_080 Hb_000260_080 Hb_000025_530--Hb_000260_080 Hb_002893_060 Hb_002893_060 Hb_000025_530--Hb_002893_060 Hb_000703_140 Hb_000703_140 Hb_000025_530--Hb_000703_140 Hb_000970_010 Hb_000970_010 Hb_000025_530--Hb_000970_010 Hb_000025_530--Hb_002477_240 Hb_003058_070--Hb_003001_060 Hb_002234_210 Hb_002234_210 Hb_003058_070--Hb_002234_210 Hb_000365_380 Hb_000365_380 Hb_003058_070--Hb_000365_380 Hb_003058_070--Hb_000798_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.18 14.2333 19.3273 13.1843 92.5658 75.7217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
97.7283 194.048 52.5938 21.9013 12.4216

CAGE analysis