Hb_000061_480

Information

Type -
Description -
Location Contig61: 431232-433408
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa013743mg
description hypothetical protein
nr
ID XP_012080340.1
description PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
swissprot
ID Q3ZC71
description Dolichol-phosphate mannosyltransferase subunit 3 OS=Bos taurus GN=DPM3 PE=3 SV=1
trembl
ID M5VL02
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013743mg PE=4 SV=1
Gene Ontology
ID GO:0005783
description dolichol-phosphate mannosyltransferase subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50964: 431276-433396
cDNA
(Sanger)
(ID:Location)		 034_G07.ab1: 431401-433367 , 052_D24.ab1: 431392-432994

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000061_480 0.0 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
2 Hb_000190_060 0.0896133546 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
3 Hb_009252_130 0.0926519443 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
4 Hb_171900_050 0.0931502098 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000703_140 0.1064124619 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
6 Hb_001214_030 0.1090390814 - - hypothetical protein POPTR_0006s10280g [Populus trichocarpa]
7 Hb_000531_020 0.1091000927 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
8 Hb_002027_110 0.1093011993 - - PREDICTED: methyl-CpG-binding domain-containing protein 4-like [Jatropha curcas]
9 Hb_000326_010 0.1100833999 - - hypothetical protein POPTR_0009s11870g [Populus trichocarpa]
10 Hb_000599_090 0.1100996103 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
11 Hb_001538_110 0.1133295652 - - PREDICTED: histone deacetylase 6, partial [Oryzias latipes]
12 Hb_001104_120 0.1137523962 - - -
13 Hb_011609_180 0.1161100447 - - PREDICTED: uncharacterized protein DDB_G0275933-like [Citrus sinensis]
14 Hb_000483_160 0.1169316058 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
15 Hb_000025_530 0.1177551561 - - PREDICTED: reactive oxygen species modulator 1 [Jatropha curcas]
16 Hb_010810_020 0.117879464 - - PREDICTED: uncharacterized protein LOC105638766 [Jatropha curcas]
17 Hb_003927_140 0.118300262 - - PREDICTED: nudix hydrolase 9 isoform X1 [Jatropha curcas]
18 Hb_000417_110 0.1186473865 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
19 Hb_000260_080 0.1188139506 - - thioredoxin H-type 1 [Hevea brasiliensis]
20 Hb_002477_240 0.1198617943 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]

Gene co-expression network

sample Hb_000061_480 Hb_000061_480 Hb_000190_060 Hb_000190_060 Hb_000061_480--Hb_000190_060 Hb_009252_130 Hb_009252_130 Hb_000061_480--Hb_009252_130 Hb_171900_050 Hb_171900_050 Hb_000061_480--Hb_171900_050 Hb_000703_140 Hb_000703_140 Hb_000061_480--Hb_000703_140 Hb_001214_030 Hb_001214_030 Hb_000061_480--Hb_001214_030 Hb_000531_020 Hb_000531_020 Hb_000061_480--Hb_000531_020 Hb_000190_060--Hb_001214_030 Hb_000190_060--Hb_009252_130 Hb_000417_110 Hb_000417_110 Hb_000190_060--Hb_000417_110 Hb_000483_160 Hb_000483_160 Hb_000190_060--Hb_000483_160 Hb_000025_530 Hb_000025_530 Hb_000190_060--Hb_000025_530 Hb_003058_070 Hb_003058_070 Hb_000190_060--Hb_003058_070 Hb_000815_270 Hb_000815_270 Hb_009252_130--Hb_000815_270 Hb_001616_020 Hb_001616_020 Hb_009252_130--Hb_001616_020 Hb_000563_590 Hb_000563_590 Hb_009252_130--Hb_000563_590 Hb_001621_180 Hb_001621_180 Hb_009252_130--Hb_001621_180 Hb_010810_020 Hb_010810_020 Hb_171900_050--Hb_010810_020 Hb_000545_150 Hb_000545_150 Hb_171900_050--Hb_000545_150 Hb_001584_070 Hb_001584_070 Hb_171900_050--Hb_001584_070 Hb_000365_380 Hb_000365_380 Hb_171900_050--Hb_000365_380 Hb_000317_340 Hb_000317_340 Hb_171900_050--Hb_000317_340 Hb_000580_080 Hb_000580_080 Hb_171900_050--Hb_000580_080 Hb_000260_080 Hb_000260_080 Hb_000703_140--Hb_000260_080 Hb_011794_070 Hb_011794_070 Hb_000703_140--Hb_011794_070 Hb_027472_180 Hb_027472_180 Hb_000703_140--Hb_027472_180 Hb_009711_030 Hb_009711_030 Hb_000703_140--Hb_009711_030 Hb_000376_050 Hb_000376_050 Hb_000703_140--Hb_000376_050 Hb_000883_050 Hb_000883_050 Hb_000703_140--Hb_000883_050 Hb_042202_010 Hb_042202_010 Hb_001214_030--Hb_042202_010 Hb_002477_240 Hb_002477_240 Hb_001214_030--Hb_002477_240 Hb_001214_030--Hb_003058_070 Hb_001214_030--Hb_000417_110 Hb_003001_060 Hb_003001_060 Hb_001214_030--Hb_003001_060 Hb_000531_020--Hb_000025_530 Hb_000531_020--Hb_000260_080 Hb_000531_020--Hb_000883_050 Hb_000531_020--Hb_000703_140 Hb_000260_050 Hb_000260_050 Hb_000531_020--Hb_000260_050 Hb_001828_090 Hb_001828_090 Hb_000531_020--Hb_001828_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.8389 5.79759 10.4034 16.5404 57.4205 42.727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.0826 121.245 50.4868 9.86377 6.00172

CAGE analysis