Hb_010810_020

Information

Type -
Description -
Location Contig10810: 6752-11701
Sequence    

Annotation

kegg
ID rcu:RCOM_1726150
description hypothetical protein
nr
ID XP_012078014.1
description PREDICTED: uncharacterized protein LOC105638766 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RSL5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1726150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02467: 6781-24090 , PASA_asmbl_02468: 6781-24090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010810_020 0.0 - - PREDICTED: uncharacterized protein LOC105638766 [Jatropha curcas]
2 Hb_171900_050 0.0559135954 - - conserved hypothetical protein [Ricinus communis]
3 Hb_009851_100 0.0884746008 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
4 Hb_000317_340 0.0908254891 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001638_260 0.0923202813 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
6 Hb_011161_050 0.0924168663 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
7 Hb_000086_550 0.0927983437 - - Os02g0814700 [Oryza sativa Japonica Group]
8 Hb_000526_150 0.0939736902 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
9 Hb_002311_320 0.0947156543 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
10 Hb_000545_150 0.0966505203 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
11 Hb_002716_090 0.0970673469 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
12 Hb_032202_090 0.0987767191 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
13 Hb_000283_110 0.099987337 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
14 Hb_001584_070 0.1009381922 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002571_020 0.1013101376 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
16 Hb_009554_010 0.1018257432 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
17 Hb_000365_380 0.1020354492 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010812_010 0.1022238494 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
19 Hb_002897_080 0.1039526113 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
20 Hb_002835_320 0.1043503416 - - 60S ribosomal protein L27B [Hevea brasiliensis]

Gene co-expression network

sample Hb_010810_020 Hb_010810_020 Hb_171900_050 Hb_171900_050 Hb_010810_020--Hb_171900_050 Hb_009851_100 Hb_009851_100 Hb_010810_020--Hb_009851_100 Hb_000317_340 Hb_000317_340 Hb_010810_020--Hb_000317_340 Hb_001638_260 Hb_001638_260 Hb_010810_020--Hb_001638_260 Hb_011161_050 Hb_011161_050 Hb_010810_020--Hb_011161_050 Hb_000086_550 Hb_000086_550 Hb_010810_020--Hb_000086_550 Hb_000545_150 Hb_000545_150 Hb_171900_050--Hb_000545_150 Hb_001584_070 Hb_001584_070 Hb_171900_050--Hb_001584_070 Hb_000365_380 Hb_000365_380 Hb_171900_050--Hb_000365_380 Hb_171900_050--Hb_000317_340 Hb_000580_080 Hb_000580_080 Hb_171900_050--Hb_000580_080 Hb_002571_020 Hb_002571_020 Hb_009851_100--Hb_002571_020 Hb_000312_090 Hb_000312_090 Hb_009851_100--Hb_000312_090 Hb_001045_080 Hb_001045_080 Hb_009851_100--Hb_001045_080 Hb_002835_320 Hb_002835_320 Hb_009851_100--Hb_002835_320 Hb_000526_150 Hb_000526_150 Hb_009851_100--Hb_000526_150 Hb_001269_270 Hb_001269_270 Hb_009851_100--Hb_001269_270 Hb_032202_090 Hb_032202_090 Hb_000317_340--Hb_032202_090 Hb_143629_230 Hb_143629_230 Hb_000317_340--Hb_143629_230 Hb_000317_340--Hb_000365_380 Hb_000317_340--Hb_000545_150 Hb_000465_060 Hb_000465_060 Hb_000317_340--Hb_000465_060 Hb_000120_750 Hb_000120_750 Hb_000317_340--Hb_000120_750 Hb_001638_260--Hb_001269_270 Hb_000283_110 Hb_000283_110 Hb_001638_260--Hb_000283_110 Hb_009554_010 Hb_009554_010 Hb_001638_260--Hb_009554_010 Hb_001638_260--Hb_000526_150 Hb_001638_260--Hb_000545_150 Hb_001818_020 Hb_001818_020 Hb_001638_260--Hb_001818_020 Hb_010812_010 Hb_010812_010 Hb_011161_050--Hb_010812_010 Hb_000975_110 Hb_000975_110 Hb_011161_050--Hb_000975_110 Hb_003561_030 Hb_003561_030 Hb_011161_050--Hb_003561_030 Hb_000364_020 Hb_000364_020 Hb_011161_050--Hb_000364_020 Hb_000199_070 Hb_000199_070 Hb_011161_050--Hb_000199_070 Hb_011161_050--Hb_000086_550 Hb_005357_130 Hb_005357_130 Hb_000086_550--Hb_005357_130 Hb_000340_140 Hb_000340_140 Hb_000086_550--Hb_000340_140 Hb_004032_100 Hb_004032_100 Hb_000086_550--Hb_004032_100 Hb_000086_550--Hb_000364_020 Hb_006816_530 Hb_006816_530 Hb_000086_550--Hb_006816_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5904 1.76928 2.59101 8.52963 13.6661 17.5226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.6878 40.5606 12.321 5.74397 4.95597

CAGE analysis