Hb_002234_210

Information

Type -
Description -
Location Contig2234: 157609-160740
Sequence    

Annotation

kegg
ID pop:POPTR_0012s13380g
description hypothetical protein
nr
ID XP_002318822.1
description hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
swissprot
ID Q9FUL4
description 60S ribosomal protein L24 OS=Prunus avium GN=RPL24 PE=2 SV=1
trembl
ID A9P8N0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0012s13380g PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l24-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002234_210 0.0 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
2 Hb_004958_050 0.0752556742 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
3 Hb_000634_050 0.0823489358 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
4 Hb_003058_070 0.087525651 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
5 Hb_000417_110 0.0879917351 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
6 Hb_000190_060 0.0902709642 - - PREDICTED: uncharacterized protein LOC105644688 isoform X1 [Jatropha curcas]
7 Hb_009252_130 0.0938970249 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
8 Hb_001616_020 0.1010231786 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
9 Hb_002293_030 0.1036124597 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
10 Hb_000798_030 0.105722256 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
11 Hb_001454_330 0.1058469593 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
12 Hb_000057_070 0.1070996618 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
13 Hb_000563_590 0.1071053531 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
14 Hb_000526_150 0.1073005654 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
15 Hb_007441_180 0.1099301482 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000483_160 0.1105555763 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
17 Hb_011310_060 0.1125558779 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
18 Hb_001214_030 0.1172057635 - - hypothetical protein POPTR_0006s10280g [Populus trichocarpa]
19 Hb_000545_150 0.117786549 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]
20 Hb_002781_020 0.1181803047 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002234_210 Hb_002234_210 Hb_004958_050 Hb_004958_050 Hb_002234_210--Hb_004958_050 Hb_000634_050 Hb_000634_050 Hb_002234_210--Hb_000634_050 Hb_003058_070 Hb_003058_070 Hb_002234_210--Hb_003058_070 Hb_000417_110 Hb_000417_110 Hb_002234_210--Hb_000417_110 Hb_000190_060 Hb_000190_060 Hb_002234_210--Hb_000190_060 Hb_009252_130 Hb_009252_130 Hb_002234_210--Hb_009252_130 Hb_011689_050 Hb_011689_050 Hb_004958_050--Hb_011689_050 Hb_001616_020 Hb_001616_020 Hb_004958_050--Hb_001616_020 Hb_004958_050--Hb_000634_050 Hb_000526_150 Hb_000526_150 Hb_004958_050--Hb_000526_150 Hb_003638_080 Hb_003638_080 Hb_004958_050--Hb_003638_080 Hb_000634_050--Hb_000417_110 Hb_000045_190 Hb_000045_190 Hb_000634_050--Hb_000045_190 Hb_001584_070 Hb_001584_070 Hb_000634_050--Hb_001584_070 Hb_002781_020 Hb_002781_020 Hb_000634_050--Hb_002781_020 Hb_000798_030 Hb_000798_030 Hb_000634_050--Hb_000798_030 Hb_000634_050--Hb_000526_150 Hb_003058_070--Hb_000417_110 Hb_003001_060 Hb_003001_060 Hb_003058_070--Hb_003001_060 Hb_003058_070--Hb_000190_060 Hb_000365_380 Hb_000365_380 Hb_003058_070--Hb_000365_380 Hb_003058_070--Hb_000798_030 Hb_000417_110--Hb_001584_070 Hb_001951_110 Hb_001951_110 Hb_000417_110--Hb_001951_110 Hb_000417_110--Hb_000798_030 Hb_000417_110--Hb_003001_060 Hb_001214_030 Hb_001214_030 Hb_000190_060--Hb_001214_030 Hb_000190_060--Hb_009252_130 Hb_000190_060--Hb_000417_110 Hb_000483_160 Hb_000483_160 Hb_000190_060--Hb_000483_160 Hb_000025_530 Hb_000025_530 Hb_000190_060--Hb_000025_530 Hb_000815_270 Hb_000815_270 Hb_009252_130--Hb_000815_270 Hb_009252_130--Hb_001616_020 Hb_000563_590 Hb_000563_590 Hb_009252_130--Hb_000563_590 Hb_000061_480 Hb_000061_480 Hb_009252_130--Hb_000061_480 Hb_001621_180 Hb_001621_180 Hb_009252_130--Hb_001621_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.193 6.88624 9.70234 3.51287 27.0835 32.9108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.8299 86.3744 18.9477 8.39376 3.58313

CAGE analysis