Hb_001053_160

Information

Type -
Description -
Location Contig1053: 126426-126635
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06660g
description POPTRDRAFT_557769; hypothetical protein
nr
ID XP_002314033.2
description hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9PBX3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s06660g PE=2 SV=1
Gene Ontology
ID GO:0004527
description f-box wd repeat-containing protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01796: 126151-127451
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001053_160 0.0 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
2 Hb_003638_080 0.1116717968 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
3 Hb_005224_050 0.120625915 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
4 Hb_000487_320 0.1265873776 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
5 Hb_005496_030 0.1270270706 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
6 Hb_000134_020 0.1277038747 - - thioredoxin-like family protein [Hevea brasiliensis]
7 Hb_003058_220 0.1318442672 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
8 Hb_002293_030 0.1323635645 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
9 Hb_143629_220 0.1323788568 - - PREDICTED: hydrophobic protein LTI6B [Phoenix dactylifera]
10 Hb_017711_010 0.1331662151 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
11 Hb_011310_060 0.1386301543 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
12 Hb_004958_050 0.1437569491 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
13 Hb_002742_050 0.1443251296 - - hypothetical protein CICLE_v10002863mg [Citrus clementina]
14 Hb_000236_460 0.1444593046 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
15 Hb_000483_160 0.1447781472 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
16 Hb_000617_050 0.1454002746 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
17 Hb_001552_080 0.1491328523 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002234_210 0.1493493271 - - hypothetical protein POPTR_0012s13380g [Populus trichocarpa]
19 Hb_009252_130 0.1509948379 - - Deletion of SUV3 suppressor 1(I) isoform 1 [Theobroma cacao]
20 Hb_000526_040 0.1510051927 - - 60S ribosomal protein L6, putative [Ricinus communis]

Gene co-expression network

sample Hb_001053_160 Hb_001053_160 Hb_003638_080 Hb_003638_080 Hb_001053_160--Hb_003638_080 Hb_005224_050 Hb_005224_050 Hb_001053_160--Hb_005224_050 Hb_000487_320 Hb_000487_320 Hb_001053_160--Hb_000487_320 Hb_005496_030 Hb_005496_030 Hb_001053_160--Hb_005496_030 Hb_000134_020 Hb_000134_020 Hb_001053_160--Hb_000134_020 Hb_003058_220 Hb_003058_220 Hb_001053_160--Hb_003058_220 Hb_000699_040 Hb_000699_040 Hb_003638_080--Hb_000699_040 Hb_003638_080--Hb_000134_020 Hb_000236_460 Hb_000236_460 Hb_003638_080--Hb_000236_460 Hb_000617_050 Hb_000617_050 Hb_003638_080--Hb_000617_050 Hb_001214_140 Hb_001214_140 Hb_003638_080--Hb_001214_140 Hb_017711_010 Hb_017711_010 Hb_005224_050--Hb_017711_010 Hb_005224_050--Hb_003058_220 Hb_000193_350 Hb_000193_350 Hb_005224_050--Hb_000193_350 Hb_000199_070 Hb_000199_070 Hb_005224_050--Hb_000199_070 Hb_003687_020 Hb_003687_020 Hb_005224_050--Hb_003687_020 Hb_002293_030 Hb_002293_030 Hb_005224_050--Hb_002293_030 Hb_001552_080 Hb_001552_080 Hb_000487_320--Hb_001552_080 Hb_004005_010 Hb_004005_010 Hb_000487_320--Hb_004005_010 Hb_000449_040 Hb_000449_040 Hb_000487_320--Hb_000449_040 Hb_000487_320--Hb_000134_020 Hb_000645_190 Hb_000645_190 Hb_000487_320--Hb_000645_190 Hb_000526_040 Hb_000526_040 Hb_005496_030--Hb_000526_040 Hb_000545_150 Hb_000545_150 Hb_005496_030--Hb_000545_150 Hb_001638_260 Hb_001638_260 Hb_005496_030--Hb_001638_260 Hb_001247_350 Hb_001247_350 Hb_005496_030--Hb_001247_350 Hb_002716_090 Hb_002716_090 Hb_005496_030--Hb_002716_090 Hb_000617_090 Hb_000617_090 Hb_005496_030--Hb_000617_090 Hb_000134_020--Hb_000645_190 Hb_011310_060 Hb_011310_060 Hb_000134_020--Hb_011310_060 Hb_003988_040 Hb_003988_040 Hb_000134_020--Hb_003988_040 Hb_000134_020--Hb_002293_030 Hb_000134_020--Hb_003058_220 Hb_003058_220--Hb_000199_070 Hb_002701_050 Hb_002701_050 Hb_003058_220--Hb_002701_050 Hb_000419_130 Hb_000419_130 Hb_003058_220--Hb_000419_130 Hb_003058_220--Hb_001247_350 Hb_003058_220--Hb_000645_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
102.286 19.0505 27.2036 26.7642 46.9626 159.898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
131.148 368.167 72.371 24.8919 2.21583

CAGE analysis