Hb_004005_010

Information

Type -
Description -
Location Contig4005: 11116-40743
Sequence    

Annotation

kegg
ID pop:POPTR_0018s06220g
description POPTRDRAFT_578418; hypothetical protein
nr
ID XP_006475731.1
description PREDICTED: uncharacterized protein LOC102623333 isoform X2 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID B9ILI9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s06220g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39824: 12091-40736
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004005_010 0.0 - - PREDICTED: uncharacterized protein LOC102623333 isoform X2 [Citrus sinensis]
2 Hb_001818_020 0.081111 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
3 Hb_000526_150 0.0900732257 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
4 Hb_000580_080 0.0906993298 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
5 Hb_001269_270 0.0919778394 - - 60S ribosomal protein L27B [Hevea brasiliensis]
6 Hb_000970_010 0.0932499352 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
7 Hb_089839_020 0.0941380723 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
8 Hb_004109_020 0.0957125706 - - 60S ribosomal protein L18aA [Hevea brasiliensis]
9 Hb_011311_010 0.0961905314 - - 60S ribosomal protein L27C [Hevea brasiliensis]
10 Hb_001638_260 0.097834708 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
11 Hb_004724_160 0.1010779342 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
12 Hb_000025_600 0.1011558629 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
13 Hb_005701_020 0.1022040087 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
14 Hb_002713_070 0.1024033835 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
15 Hb_009554_010 0.1028013885 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
16 Hb_000661_240 0.1047795104 - - hypothetical protein POPTR_0009s05540g [Populus trichocarpa]
17 Hb_002296_060 0.1058307032 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Fragaria vesca subsp. vesca]
18 Hb_000438_220 0.106347154 - - PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]
19 Hb_001584_070 0.1066659743 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000526_040 0.1075667207 - - 60S ribosomal protein L6, putative [Ricinus communis]

Gene co-expression network

sample Hb_004005_010 Hb_004005_010 Hb_001818_020 Hb_001818_020 Hb_004005_010--Hb_001818_020 Hb_000526_150 Hb_000526_150 Hb_004005_010--Hb_000526_150 Hb_000580_080 Hb_000580_080 Hb_004005_010--Hb_000580_080 Hb_001269_270 Hb_001269_270 Hb_004005_010--Hb_001269_270 Hb_000970_010 Hb_000970_010 Hb_004005_010--Hb_000970_010 Hb_089839_020 Hb_089839_020 Hb_004005_010--Hb_089839_020 Hb_001818_020--Hb_000970_010 Hb_000545_150 Hb_000545_150 Hb_001818_020--Hb_000545_150 Hb_001584_070 Hb_001584_070 Hb_001818_020--Hb_001584_070 Hb_000025_600 Hb_000025_600 Hb_001818_020--Hb_000025_600 Hb_000007_100 Hb_000007_100 Hb_001818_020--Hb_000007_100 Hb_001638_260 Hb_001638_260 Hb_001818_020--Hb_001638_260 Hb_000526_150--Hb_001269_270 Hb_000526_150--Hb_001638_260 Hb_009851_100 Hb_009851_100 Hb_000526_150--Hb_009851_100 Hb_000526_150--Hb_000545_150 Hb_000634_050 Hb_000634_050 Hb_000526_150--Hb_000634_050 Hb_000526_150--Hb_001818_020 Hb_000465_060 Hb_000465_060 Hb_000580_080--Hb_000465_060 Hb_000580_080--Hb_089839_020 Hb_001824_070 Hb_001824_070 Hb_000580_080--Hb_001824_070 Hb_000580_080--Hb_001584_070 Hb_001235_210 Hb_001235_210 Hb_000580_080--Hb_001235_210 Hb_001477_110 Hb_001477_110 Hb_000580_080--Hb_001477_110 Hb_003125_150 Hb_003125_150 Hb_001269_270--Hb_003125_150 Hb_001269_270--Hb_001638_260 Hb_000617_090 Hb_000617_090 Hb_001269_270--Hb_000617_090 Hb_001045_080 Hb_001045_080 Hb_001269_270--Hb_001045_080 Hb_001269_270--Hb_009851_100 Hb_008173_090 Hb_008173_090 Hb_000970_010--Hb_008173_090 Hb_023732_070 Hb_023732_070 Hb_000970_010--Hb_023732_070 Hb_002518_050 Hb_002518_050 Hb_000970_010--Hb_002518_050 Hb_000970_010--Hb_001584_070 Hb_000970_010--Hb_000545_150 Hb_003734_140 Hb_003734_140 Hb_089839_020--Hb_003734_140 Hb_002713_070 Hb_002713_070 Hb_089839_020--Hb_002713_070 Hb_000227_230 Hb_000227_230 Hb_089839_020--Hb_000227_230 Hb_002925_030 Hb_002925_030 Hb_089839_020--Hb_002925_030 Hb_000136_170 Hb_000136_170 Hb_089839_020--Hb_000136_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.91227 0.899615 0.495667 0.72358 1.88837 2.23726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.33181 7.05842 1.61849 1.40183 0.359981

CAGE analysis